Detail information of GWHGAAEX012123/evm.TU.scaffold_40.82
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|340787855|ref|YP_004753320.1| | 4.00E-17 | peptidyl prolyl 4-hydroxylase-like protein subunit alpha [Collimonas fungivorans Ter331] |
| KOG | KOG1591 | 2.00E-54 | Prolyl 4-hydroxylase alpha subunit |
| nr | gi|573939522|ref|XP_006652181.1| | 9.15E-54 | PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Oryza brachyantha] |
| Swissprot | tr|Q9ZW86|P4H1_ARATH | 4.00E-55 | Prolyl 4-hydroxylase 1 (Precursor) |
| trEMBL | tr|M0TUE7|M0TUE7_MUSAM | 2.00E-54 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P28440_001} |
| TAIR | AT2G43080 | 2.00E-54 | P4H isoform 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000038 | 3575521 | 3583188 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012123
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13640.5 | 2OG-FeII_Oxy_3 | 51 | 138 | 3.50E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00472 | P4HA | Metabolic pathways | map01100 |
| Arginine and proline metabolism | map00330 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0031418 | Molecular Function | L-ascorbic acid binding |
| GO:0005506 | Molecular Function | iron ion binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0016705 | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.490 |
| SRR2545915 | Juvenile tuber | 26.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.040 |
| SRR5643514 | five period of Gastrodia elata | 13.560 | |
| SRR5643515 | five period of Gastrodia elata | 23.250 | |
| SRR5643524 | five period of Gastrodia elata | 11.250 | |
| SRR5643525 | five period of Gastrodia elata | 17.540 | |
| SRR5643528 | five period of Gastrodia elata | 28.070 | |
| SRR5643658 | five period of Gastrodia elata | 26.150 | |
| SRR5643659 | five period of Gastrodia elata | 16.560 | |
| SRR5643660 | five period of Gastrodia elata | 16.650 | |
| SRR5643661 | five period of Gastrodia elata | 15.230 | |
| SRR5643662 | five period of Gastrodia elata | 13.140 | |
| SRR5643663 | five period of Gastrodia elata | 15.850 | |
| SRR5643664 | five period of Gastrodia elata | 18.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.050 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.87 |
| Juven | Juvenile tuber | 9.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.37 | |
| Mother_Juven | Mother tuber of Juvenile | 9.12 |