Detail information of GWHGAAEX012124/evm.TU.scaffold_40.83


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|171059332|ref|YP_001791681.1|4.00E-09procollagen-proline dioxygenase [Leptothrix cholodnii SP-6]
KOGKOG15911.00E-40Prolyl 4-hydroxylase alpha subunit
nrgi|743881483|ref|XP_010908914.1|5.98E-47PREDICTED: prolyl 4-hydroxylase 1 isoform X2 [Elaeis guineensis]
Swissprottr|Q9ZW86|P4H1_ARATH4.00E-41Prolyl 4-hydroxylase 1 (Precursor)
trEMBLtr|A0A067EH39|A0A067EH39_CITSI7.00E-45Uncharacterized protein {ECO:0000313|EMBL:KDO50532.1}
TAIRAT2G430801.00E-40P4H isoform 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003835872743618072-
Transcript Sequence

Network for GWHGAAEX012124

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00472P4HA Metabolic pathways map01100
Arginine and proline metabolismmap00330

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.100
SRR2545915Juvenile tuber26.970
SRP108465SRR5643513five period of Gastrodia elata10.360
SRR5643514five period of Gastrodia elata8.450
SRR5643515five period of Gastrodia elata6.200
SRR5643524five period of Gastrodia elata5.630
SRR5643525five period of Gastrodia elata11.300
SRR5643528five period of Gastrodia elata10.960
SRR5643658five period of Gastrodia elata11.130
SRR5643659five period of Gastrodia elata6.940
SRR5643660five period of Gastrodia elata4.760
SRR5643661five period of Gastrodia elata7.770
SRR5643662five period of Gastrodia elata9.780
SRR5643663five period of Gastrodia elata9.740
SRR5643664five period of Gastrodia elata7.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.280
SRR6049655Rhizomagastrodiae_C368-T10_good_12.590
SRR6049656Rhizomagastrodiae_C368-T07_good_13.810
SRR6049657Rhizomagastrodiae_C368-T07_good_11.420
SRR6049658Rhizomagastrodiae_C368-T04_good_16.850
SRR6049659Rhizomagastrodiae_C368-T04_good_111.260
SRR6049660Rhizomagastrodiae_C368-T01_good_14.880
SRR6049661Rhizomagastrodiae_C368-T04_good_13.730
SRR6049662Rhizomagastrodiae_C368-T01_good_18.730
SRR6049663Rhizomagastrodiae_C368-T01_good_13.870
SRR6049664Rhizomagastrodiae_C368-T10_good_15.270
SRR6049665Rhizomagastrodiae_C368-T10_good_15.270
SRP279888GastroGastrodia elata tuber 4.75
JuvenJuvenile tuber6.25
Mother_GastroMother tuber of Gastrodia elata 9.65
Mother_JuvenMother tuber of Juvenile 7.16