Detail information of GWHGAAEX012128/evm.TU.scaffold_40.90
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530779864|ref|YP_008431664.1| | 2.00E-27 | hypothetical protein N186_01315 [Thermofilum sp. 1910b] |
| KOG | KOG0087 | 3.00E-118 | GTPase Rab11/YPT3, small G protein superfamily |
| nr | gi|720079749|ref|XP_010241769.1| | 3.47E-118 | PREDICTED: ras-related protein RABA5c [Nelumbo nucifera] |
| Swissprot | tr|Q9SIP0|RAA5D_ARATH | 1.00E-118 | Ras-related protein RABA5d |
| trEMBL | tr|A0A068U607|A0A068U607_COFCA | 3.00E-118 | Coffea canephora |
| TAIR | AT2G31680 | 3.00E-118 | RAB GTPase homolog A5D |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000038 | 4042522 | 4066660 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012128
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00071.21 | Ras | 12 | 172 | 7.90E-61 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07904 | RAB11A | Endocytosis | map04144 |
| Pancreatic secretion | map04972 | ||
| Vasopressin-regulated water reabsorption | map04962 | ||
| Endocrine and other factor-regulated calcium reabsorption | map04961 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005525 | Molecular Function | GTP binding |
| GO:0003924 | Molecular Function | GTPase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 68.130 |
| SRR2545915 | Juvenile tuber | 79.930 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 156.100 |
| SRR5643514 | five period of Gastrodia elata | 126.050 | |
| SRR5643515 | five period of Gastrodia elata | 149.020 | |
| SRR5643524 | five period of Gastrodia elata | 125.620 | |
| SRR5643525 | five period of Gastrodia elata | 214.370 | |
| SRR5643528 | five period of Gastrodia elata | 155.820 | |
| SRR5643658 | five period of Gastrodia elata | 155.270 | |
| SRR5643659 | five period of Gastrodia elata | 153.600 | |
| SRR5643660 | five period of Gastrodia elata | 161.060 | |
| SRR5643661 | five period of Gastrodia elata | 168.260 | |
| SRR5643662 | five period of Gastrodia elata | 168.070 | |
| SRR5643663 | five period of Gastrodia elata | 141.470 | |
| SRR5643664 | five period of Gastrodia elata | 172.530 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 109.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 119.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 113.680 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 119.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 115.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 115.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 126.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 117.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 137.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 111.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 121.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 121.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 162.49 |
| Juven | Juvenile tuber | 157.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 132.78 | |
| Mother_Juven | Mother tuber of Juvenile | 142.86 |