Detail information of GWHGAAEX012130/evm.TU.scaffold_40.93


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|357393107|ref|YP_004907948.1|1.00E-10hypothetical protein KSE_62270 [Kitasatospora setae KM-6054]
KOGKOG12720WD40-repeat-containing subunit of the 18S rRNA processing complex
nrgi|743765564|ref|XP_010913006.1|0PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Elaeis guineensis]
Swissprottr|Q8H0T9|KTNB1_ARATH2.00E-10Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022}
trEMBLtr|M0T7K3|M0T7K3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P16550_001}
TAIRAT3G105300Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003842061804231248+
Transcript Sequence

Network for GWHGAAEX012130

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD402673012.70E-06
PF08149.10BING4CT3484266.40E-33
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.250
SRR2545915Juvenile tuber18.020
SRP108465SRR5643513five period of Gastrodia elata21.680
SRR5643514five period of Gastrodia elata23.760
SRR5643515five period of Gastrodia elata22.200
SRR5643524five period of Gastrodia elata21.150
SRR5643525five period of Gastrodia elata15.750
SRR5643528five period of Gastrodia elata13.560
SRR5643658five period of Gastrodia elata14.680
SRR5643659five period of Gastrodia elata29.850
SRR5643660five period of Gastrodia elata30.280
SRR5643661five period of Gastrodia elata27.270
SRR5643662five period of Gastrodia elata27.480
SRR5643663five period of Gastrodia elata27.590
SRR5643664five period of Gastrodia elata30.150
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_127.430
SRR6049655Rhizomagastrodiae_C368-T10_good_125.980
SRR6049656Rhizomagastrodiae_C368-T07_good_125.720
SRR6049657Rhizomagastrodiae_C368-T07_good_126.940
SRR6049658Rhizomagastrodiae_C368-T04_good_125.440
SRR6049659Rhizomagastrodiae_C368-T04_good_128.140
SRR6049660Rhizomagastrodiae_C368-T01_good_130.260
SRR6049661Rhizomagastrodiae_C368-T04_good_130.610
SRR6049662Rhizomagastrodiae_C368-T01_good_126.890
SRR6049663Rhizomagastrodiae_C368-T01_good_128.910
SRR6049664Rhizomagastrodiae_C368-T10_good_130.880
SRR6049665Rhizomagastrodiae_C368-T10_good_130.880
SRP279888GastroGastrodia elata tuber 38.74
JuvenJuvenile tuber32.62
Mother_GastroMother tuber of Gastrodia elata 28.45
Mother_JuvenMother tuber of Juvenile 36.87