Detail information of GWHGAAEX012136/evm.TU.scaffold_40.103


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG0687026S proteasome regulatory complex, subunit RPN7/PSMD6
nrgi|743765344|ref|XP_010912891.1|0PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 [Elaeis guineensis]
Swissprottr|Q8W425|PSMD6_ORYSJ026S proteasome non-ATPase regulatory subunit 6
trEMBLtr|M5WMC9|M5WMC9_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ10433.1}
TAIRAT4G24820026S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003848656274903123-
Transcript Sequence

Network for GWHGAAEX012136

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10602.8RPN7632363.10E-55
PF01399.26PCI2523541.80E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03037PSMD6, RPN7 Proteasome map03050

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms209.120
SRR2545915Juvenile tuber231.730
SRP108465SRR5643513five period of Gastrodia elata142.910
SRR5643514five period of Gastrodia elata169.440
SRR5643515five period of Gastrodia elata136.910
SRR5643524five period of Gastrodia elata156.260
SRR5643525five period of Gastrodia elata118.010
SRR5643528five period of Gastrodia elata125.230
SRR5643658five period of Gastrodia elata137.460
SRR5643659five period of Gastrodia elata145.300
SRR5643660five period of Gastrodia elata150.700
SRR5643661five period of Gastrodia elata146.450
SRR5643662five period of Gastrodia elata155.240
SRR5643663five period of Gastrodia elata149.280
SRR5643664five period of Gastrodia elata157.140
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1156.730
SRR6049655Rhizomagastrodiae_C368-T10_good_1212.410
SRR6049656Rhizomagastrodiae_C368-T07_good_1170.870
SRR6049657Rhizomagastrodiae_C368-T07_good_1152.280
SRR6049658Rhizomagastrodiae_C368-T04_good_1156.950
SRR6049659Rhizomagastrodiae_C368-T04_good_1150.850
SRR6049660Rhizomagastrodiae_C368-T01_good_1152.370
SRR6049661Rhizomagastrodiae_C368-T04_good_1151.170
SRR6049662Rhizomagastrodiae_C368-T01_good_1169.000
SRR6049663Rhizomagastrodiae_C368-T01_good_1158.850
SRR6049664Rhizomagastrodiae_C368-T10_good_1184.760
SRR6049665Rhizomagastrodiae_C368-T10_good_1184.760
SRP279888GastroGastrodia elata tuber 228.38
JuvenJuvenile tuber230.59
Mother_GastroMother tuber of Gastrodia elata 136.09
Mother_JuvenMother tuber of Juvenile 188.84