Detail information of GWHGAAEX012138/evm.TU.scaffold_40.107
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502232|ref|YP_001957949.1| | 6.00E-12 | hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG0167 | 0 | FOG: Armadillo/beta-catenin-like repeats |
| nr | gi|743765229|ref|XP_010912829.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 6-like [Elaeis guineensis] |
| Swissprot | tr|O48700|PUB6_ARATH | 0 | U-box domain-containing protein 6 |
| trEMBL | tr|F6HG65|F6HG65_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB51258.1} |
| TAIR | AT1G27910 | 0 | plant U-box 45 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000038 | 5185790 | 5206547 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012138
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04564.14 | U-box | 245 | 314 | 2.80E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.840 |
| SRR2545915 | Juvenile tuber | 2.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.700 |
| SRR5643514 | five period of Gastrodia elata | 8.460 | |
| SRR5643515 | five period of Gastrodia elata | 6.800 | |
| SRR5643524 | five period of Gastrodia elata | 8.110 | |
| SRR5643525 | five period of Gastrodia elata | 8.040 | |
| SRR5643528 | five period of Gastrodia elata | 7.250 | |
| SRR5643658 | five period of Gastrodia elata | 6.980 | |
| SRR5643659 | five period of Gastrodia elata | 8.590 | |
| SRR5643660 | five period of Gastrodia elata | 10.080 | |
| SRR5643661 | five period of Gastrodia elata | 10.670 | |
| SRR5643662 | five period of Gastrodia elata | 9.200 | |
| SRR5643663 | five period of Gastrodia elata | 7.800 | |
| SRR5643664 | five period of Gastrodia elata | 10.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.68 |
| Juven | Juvenile tuber | 5.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.35 | |
| Mother_Juven | Mother tuber of Juvenile | 5.34 |