Detail information of GWHGAAEX012141/evm.TU.scaffold_40.111
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|148378239|ref|YP_001252780.1| | 3.00E-40 | FAD-binding protein [Clostridium botulinum A str. ATCC 3502] |
| nr | gi|695013018|ref|XP_009393283.1| | 0 | PREDICTED: tetrahydrocannabinolic acid synthase-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|A6P6V9|CBDAS_CANSA | 1.00E-139 | Cannabidiolic acid synthase (Precursor) |
| trEMBL | tr|A5BZS5|A5BZS5_VITVI | 1.00E-171 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN81654.1} |
| TAIR | AT4G20820 | 8.00E-151 | FAD-binding Berberine family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000038 | 5361858 | 5363561 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012141
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01565.22 | FAD_binding_4 | 78 | 218 | 3.80E-27 |
| PF08031.11 | BBE | 467 | 525 | 6.10E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0071949 | Molecular Function | FAD binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.380 |
| SRR2545915 | Juvenile tuber | 5.710 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.930 |
| SRR5643514 | five period of Gastrodia elata | 22.440 | |
| SRR5643515 | five period of Gastrodia elata | 51.640 | |
| SRR5643524 | five period of Gastrodia elata | 42.270 | |
| SRR5643525 | five period of Gastrodia elata | 8.330 | |
| SRR5643528 | five period of Gastrodia elata | 208.020 | |
| SRR5643658 | five period of Gastrodia elata | 15.760 | |
| SRR5643659 | five period of Gastrodia elata | 24.750 | |
| SRR5643660 | five period of Gastrodia elata | 14.220 | |
| SRR5643661 | five period of Gastrodia elata | 19.080 | |
| SRR5643662 | five period of Gastrodia elata | 19.880 | |
| SRR5643663 | five period of Gastrodia elata | 9.410 | |
| SRR5643664 | five period of Gastrodia elata | 12.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.39 |
| Juven | Juvenile tuber | 6.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 537.16 | |
| Mother_Juven | Mother tuber of Juvenile | 584.17 |