Gene detail

Detail information of GWHGAAEX012142/evm.TU.scaffold_40.115

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|209886816\|ref\|YP_002290673.1\|	2.00E-07	hypothetical protein OCAR_7710 [Oligotropha carboxidovorans OM5]
nr	gi\|743888524\|ref\|XP_010910641.1\|	0	PREDICTED: ETO1-like protein 1 [Elaeis guineensis]
Swissprot	tr\|Q9ZQX6\|ETOL1_ARATH	0	ETO1-like protein 1
trEMBL	tr\|M0SQS7\|M0SQS7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P21140_001}
TAIR	AT4G02680	0	ETO1-like 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000038	5497507	5518795	-

Transcript Sequence
>GWHTAAEX012142 AGAAAACTTATAGATATCATAGGAACACTAGAGCAAAATATTTTCTGTTCGTGCAGTTATAAAATTCGAGTGTTATCGGTTAGTTATCTCATCCATATCTCTCTCCCCCAAGATCAGATCCTTTTTATAAACCCTTTCTGCGTTTGAATTTAATCGGATATTTTCATTGGAAGTGTGCCTCGTCTACTAGTAATTAATGGTTGCTATTTGTAATGAAAACGATCCAATTTTTTATAATTAGATTGTCTTCTTCTTCTTTAGTGTTTTCTACGCTGTTCTTGATGCTGAAGTAGTCTTCTGAGCCGCGTTCCGTCAGACGGTTTTACTTGTTAAGGATGTGAAGCGATATACTTTTATTGATCGGTCGTTCACTTTTAATCATAGCGAGTTCTACTCATTAGGTGGATTGATTGATGTTTAGGGGGGGCTAAAGTTGCATCCTTATCTGAATTCCAGTATCAGAAGATATCTTGTTAAGGGTGGCTTTTGTGAAGAACCCATTTCGAAACAGTGAAGATTAGGGCAGTTTCTTGGATTTTTAGCGCGATGAGGTGTCTGTTCCTCTCTGCCTCCTGTAAGAAAGCGAAGTTCCATGCCATTAATCCTCAGCCATTGCTTCAAGTTGAGAGGGAAAAGGTCTCCAATTTGCCCCCACTATCTCTGACTTCTATTGAATCCTTAATCAAGGTTGCAGAGCCTCCTGTTCTTCCATTCTTTAAGCCAATTGACTATGTAGATGCCTTAGCTCAGATTCATGAGGAATTGGACTTCTGTCTTCCCCATGAGAAATCAGAGTTGTACTTCTTTCAGTTTCAGGTATTTAGGGGTCTTGGAGACGTTAAGCTACCCCAGAGCAGCCTGCGTTCTGCTCTGAAGACGGGCACTACTGTATATGAGAAGCTCATATTCGGAGCTTGGCTTAAATATGAGAAAAAGGAAGAGGAATCCTTTTTTGATCTCATTGCATCATGCGTGAAATGCTGCGAGGAACTCAGCATCTTAGATGTTGTTCTAGAAATTTCTATTCGGTCTTCAGAGGCAACAGATACCTGTTTTCCCCTCGAAATAGAGAAATCAAACACTGTTTTCTTCCGTGTTAGAGAAGAATATATAGCTTGCGATAGGCAGAAGATTGCTAATTTGTCCCACCCTTTCCAAACCATGCTCAAAGGGTGCTTCACTGAGTCGAATCAAGAAGTTATAGACATGTCTGAGAACAGTATCTCCCCCTTAGGCATGAGAGCGATAAGCGATTTCAGTCTTTTTGGAAGCCTGAGCGATTCATTATCAGTGGATGTTTTGGTAGAGATTTTAGTTTTTGCAAATAAATTTTGCTGTGAGAGACTCAAAGCAGCATGCGATAGAAAGCTGGCGTCTTTGGTTTCTTCAAGGCGAGATGCTATCGACCTCATGCACTGCGCATTGGAAGAAAGTTCTCCAGTTCTTGCTGCTTCTTGCATACAGCTGTTCCTGCGGAATCTCACTGATTGTGTGCAAGATGAGCAATTAGTTAGCCTTTTTATCTCTTCAAATAGGCAACAAAGGTTCATCATGGCCGGGCATGCTTCATTCCCTCTGTATTGTTTGCTCTGTCAGGTAGCCATGAATGCTAATCCCAGCTCTGATACCACAGTTTCTTTATTGAAAAAGCTGGTTGAGTCTGCAGTGAGTAGCAGGCAGAAGCAGCTAGCCTTTCACCAGCTTGGCTGCGTGAAGCTCTTGCGGAAGGAATACAATGATGCAGGATGCCTTTTCGAAGCGGCTGCTGCGGCTGGGCATAGCTACTCGGTTGCTGGTATGGCTAGAATAGCTTGCTTAAGGGGAAATAAGCATTCAGCATATGAGATGATCAGTACCTTAATCTCTTCATGCAATCCTCTGGGTTGGATGTATCAAGAAAGATCTTTGTACATCGATAAGGAAGAGAACAAATGGGAAGACCTTGATAAAGCAACAGAGTTAGATCCCACTCTTGTTTATCCTTACATGTTTCGAGCATCTTGCTTTATGAAACAACATAGTACAAATAAAGCTCTGGACGAGATAAATCGAGTTTTGGGATTTCAATTGAATCTAGAATGCTTAGAATTACGATTTTGCATATATTTGGCTTTCAATGATTATGGAGCAGCACTGTGTGATGTAGAGGCAATACTTACATTGTCTCCGGAGTATCAAATGTTTCAAGGGAATGTGGCTTCTTCGCTCTTACGAACACTTGTTCGGGAGCATATTGAGAGGTGGACAATTGCTGATTGCTGGATTCAACTTTATGAGCGGTGGTCGGTAGCGGATGATATTGGATCTCTCTCGGCTATCTATCAAATGCTTGAGGCGCCAGAAGCTGCAAAGGGATTTTTGTATTTTAGGCAATCTTTACTTCTTCTTAGGTTGAATTGTCCAGAAGCAGCAATCCGAAGCTTGGAGCTAGCACGTCGGCATGCACATTGTGTGCATGAACGATTGGTGTACGAGGGATGGATTTTATATGATACAGGGCACTGTGAGGAAGCTTTTCTCAAAGCCCAGGAATCAATCTCCATTCAAAGGTCTTTTGAGGCCTTCTTTTTGAAAGCATATGCTCTTGCAGATTCAAGCCCAGATTCTTCATGCTCCTTAGCTATCATATCACTTCTAGAAGATGCCTTGAGATGCCCATCTGATTGGCTTCGAAAGGGTCAGGCCTTGAACAATCTCGGCACTGTGTACGTGGATTGCGGGAATCTGGAGCAGGCGTCAGACTGCTATAAAAGTGCCCTGATGATACAGCACTCCCGAGCTCATCAGGGACTCGCTCGCATCCACTTCCTGAATGACCAATGGGATTCCGCCTACCACGAAATGACGAAGATGATAGACAAGGCCGCTGGAAACTGTGCATCAGCTTACGAGAAGAGATCCGAGTACTGCGACCGCGGCCTATCATTGGCCGATCTGGAGATGGCTACCAGATTGGATCCGCTGCGTGTTTATCCCTACAGATATCGTGCTTCAGTGCTGATGGACACTCAGAAGGTGGAAGAGGCGTTCTCCGAGCTTTCAAGGGCAATTGCCTTCAAGGCGGATCTGCAGCTGCTCCTCTTGAGAGCGACCTTCCACGAGCATGCCGGGGATGTGGCAGCTGCCCTTCGTGACTGTAGGGCAGCCCTATCTCTGGAACCTAACCACAAAGAAGTGCTGGAGCTCCAAAAAAGACTGAACAGCCAGCAACGATGACGGTTCAGTTCAGCATTATTGCCTCTGATTCATTCTTTGCTCTTTAACATATATAGTTGTTTTTTTTTTTCTTCTTTTTGTATTTAAAAGCGTTGTTGATCTCTCAGTGGGTTTGCTTGTGAAGGGGTTGAGAGATGGAATGTCAATTCATGTTTTTTTTTTTTAGCTTTGTTGATGCTGATTTTTCTATAACACCACAATTGAATAAGAGAATTTGGAGCTCCGTTTAACAATAGAAGTTTTGAAGAGAGGTAGC

Network for GWHGAAEX012142

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13181.5	TPR_8	712	740	0.0063

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.660
SRP064423	SRR2545915	Juvenile tuber	9.640
SRP108465	SRR5643513	five period of Gastrodia elata	7.450
	SRR5643514	five period of Gastrodia elata	6.760
	SRR5643515	five period of Gastrodia elata	7.660
	SRR5643524	five period of Gastrodia elata	6.210
	SRR5643525	five period of Gastrodia elata	10.240
	SRR5643528	five period of Gastrodia elata	9.810
	SRR5643658	five period of Gastrodia elata	11.500
	SRR5643659	five period of Gastrodia elata	9.590
	SRR5643660	five period of Gastrodia elata	8.440
	SRR5643661	five period of Gastrodia elata	7.910
	SRR5643662	five period of Gastrodia elata	8.370
	SRR5643663	five period of Gastrodia elata	8.730
	SRR5643664	five period of Gastrodia elata	11.510
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.420
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.540
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.460
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.460
SRP279888	Gastro	Gastrodia elata tuber	10.28
	Juven	Juvenile tuber	7.09
	Mother_Gastro	Mother tuber of Gastrodia elata	9.62
	Mother_Juven	Mother tuber of Juvenile	5.69