Detail information of GWHGAAEX012146/evm.TU.scaffold_409.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|20094127|ref|NP_613974.1|1.00E-09SMC1-family ATPase [Methanopyrus kandleri AV19]
KOGKOG09620DNA repair protein RAD50, ABC-type ATPase/SMC superfamily
nrgi|743803757|ref|XP_010927015.1|0PREDICTED: DNA repair protein RAD50 [Elaeis guineensis]
Swissprottr|Q9SL02|RAD50_ARATH0DNA repair protein RAD50
trEMBLtr|M0TY87|M0TY87_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P07280_001}
TAIRAT2G319700DNA repair-recombination protein (RAD50)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000401662036816-
Transcript Sequence

Network for GWHGAAEX012146

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13476.5AAA_2372469.30E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10866RAD50 Homologous recombination map03440
Non-homologous end-joiningmap03450
Cellular senescencemap04218

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.180
SRR2545915Juvenile tuber10.120
SRP108465SRR5643513five period of Gastrodia elata18.350
SRR5643514five period of Gastrodia elata15.750
SRR5643515five period of Gastrodia elata15.670
SRR5643524five period of Gastrodia elata18.820
SRR5643525five period of Gastrodia elata10.450
SRR5643528five period of Gastrodia elata5.050
SRR5643658five period of Gastrodia elata4.060
SRR5643659five period of Gastrodia elata46.150
SRR5643660five period of Gastrodia elata57.480
SRR5643661five period of Gastrodia elata8.520
SRR5643662five period of Gastrodia elata50.470
SRR5643663five period of Gastrodia elata53.300
SRR5643664five period of Gastrodia elata66.390
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.580
SRR6049655Rhizomagastrodiae_C368-T10_good_114.200
SRR6049656Rhizomagastrodiae_C368-T07_good_110.640
SRR6049657Rhizomagastrodiae_C368-T07_good_19.580
SRR6049658Rhizomagastrodiae_C368-T04_good_18.970
SRR6049659Rhizomagastrodiae_C368-T04_good_111.860
SRR6049660Rhizomagastrodiae_C368-T01_good_110.430
SRR6049661Rhizomagastrodiae_C368-T04_good_18.010
SRR6049662Rhizomagastrodiae_C368-T01_good_17.610
SRR6049663Rhizomagastrodiae_C368-T01_good_17.160
SRR6049664Rhizomagastrodiae_C368-T10_good_114.090
SRR6049665Rhizomagastrodiae_C368-T10_good_114.090
SRP279888GastroGastrodia elata tuber 17.15
JuvenJuvenile tuber29.02
Mother_GastroMother tuber of Gastrodia elata 17.96
Mother_JuvenMother tuber of Juvenile 44.78