Gene detail

Detail information of GWHGAAEX012151/evm.TU.scaffold_41.18

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|296089063\|emb\|CBI38766.3\|	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9M2E8\|HDG1_ARATH	Homeobox-leucine zipper protein HDG1
trEMBL	tr\|F6I316\|F6I316_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61333.1}
TAIR	AT3G61150	homeodomain GLABROUS 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000040	1259965	1265198	-

Transcript Sequence
>GWHTAAEX012151 GCTCCTGTTCCGTCTTTTTCCCCCTTGCCCCATTGCTTAGGGTGGGGCGATTTCCCTCCCTGCCTTTCCATTTGACACTTGATCGACCGGAATGGAGGAAGCAGTTGGCGACGCCTAGAAGCCGCGCAAACTTAGATCTGAGGTCGGATTCAAAGCATGAGTTTTGGAGGCTTGTTCGAGGGCGGCGACGGTTGTGATTTCCCCCCTTTCGGTGGCGCCGCCCTTCCGGCCCTCGTTTCCAATGTTCCGAAGCCCATGTTCGGTTCAGCCGGTCTCTCTCTCGGTCTCAGAAATGGAGGAGAAGGCGTGTGCCGAAGCAGGGAGGACGAAAACGAGAGCAGCGATAATCTGGAAGGAGTGTCGGGCGATGATTTCGAGGAGAATCCCTGCAAGAAGAAGAAGCGCTACCACCGCCACACCCCCAATCAAATCCAAGAGCTCGAAGCGCTGTTCAAGGAGTGCCCTCACCCGGACGAGAAGCAGAGGATGGAGCTGAGCAGGCGGCTGGGGCTGGAGACCCGGCAGGTGAAGTTCTGGTTCCAGAATCGGCGAACTCAGATGAAGACCCAGATGGAGCGGCACGAGAACAGCATGCTGAGGGCGGAGAACGACAAGCTGCGGGCGGAGAGCGTGTGCATAAGGGACGCCATGCGGAACCCGATCTGCAGCGGCTGCGGCGGCCCGGCGGTGCTCGGCGAGGTGTCTCCGGAGGAGCAGCAGCTGAGGGTCGAGAACGCCAGGCTCAAGGACGAGCTCGACAGGGTCTGCTCCCTCGCCGGCAAGTTTCTCGGCAGGCCCGTATCCGCCCTCGAGCTCGGTTTCGGGCTCTCTGGCCCGATTGCGAGACCCGATTCCACGCTGCTGGACCTGGCCCTCTCCGCTGCCGACGAGCTTGTGAAGATAGCCGAGATGGGGAGCCCGCTTTGGATCAATTCTTCTGGGATGGAGAGTGCCAGGGAGGAGGCTCTCGATTTTGACCACTATGACCAGCTCTTCCCGCGCTGCGTCGGCCTCAAGGACCCTCATTTGGTCTCTGAGGCCACCAGGGAGACCGCCATCATCTTCATCAGCGCCATCGCCCTTGTTGAAGCTCTCATGGATTCGGTCCGGTGGGCGGAGATGTTCCCGGGGATGGTTGCTAGGACGGTGACGACCGACGTGATCTCATCCGGAGTTGGCGCCACCATGAATGGCGCTCTCCAGCTAATGTATGCTGAGCTGCAGGTTCTCTCCCCGCTGGTCCCAATACGCGAAATAAACTTTCTGAGATTCTGCAAGCAGCTGGCCGACGGAGCCTGGGCGGTCGTCGACGTCTCCATCGATGGAATCCGCGATGGCCACGCACCCGCAGCCGCCCTTCCCGCTAAATGCCGCAGGCTTCCCTCCGGCTGCGTCGTCCAAAGCATGCCCAACGGTTACTCCAAGGTGACGTGGGTGGAGCACGCGGAGTACGACGAGTCGGCGGTGCACCAGCTGTGCCGCCCCCTGGTCCGCTCCGGGCTGGCCTTCGGCTCTCGCCGCTGGGTCTCGTCCCTGCAGCGCGGCCTGCTCGGCGGGACTGCGGCGGGCCGGCGCAGCCTGCTGCGCCTGGCGCGGCGGATGACCGACGGCTTCTGCGCCGGGATGCGCGCCTCGCCGTCGCCGTCGCGCAAGTGGGCCTGCCTCGCGAACGTGGGCGGCGCGGGCGACGACGTGCGGGTGATGACCAGGCAGAGCGCGGACGAGCCCGGGGAGCCTCCGGGCGTCGTCCTCTCGGCGGCCACCTCCGTCTGGGTCCCAGCGGGCCCACGCCGGCTCCTCGGCTTCCTGCGCGACGAGAGCCTGCGCAGCCGGTGGGACGTCCTATCCAGCGGGGGCGGGCCCATGCAGGAGGTAGCCCGCGTCCCCGTCGGCGACGGCGCCGTCTCTCTGCTGAGGTCCGCCGCCGCCAGCGCCGCCGGCCAGAGCGGAATGCTGATACTGCAGGAGACCTGCGAGGACGCGTGCGGCTCCACGGTCGTCTACGCTCCCGTCGACGTCCCCGCCATGCACGCCGTCATGAACGGAGCCGACCCCGCGTGCGTCCCCCTGCTCCCGTCCGGCTTCGCAGTGCTGCCCGACGGGGATCCAGCCGCCCGCGGGGCTCTGCTGACGGTCGCGTTTCAGATCCTTGTCAACAGCCTCCCGACGGCCAAGCTGACTGTCGAGTCTGTGGAGACCGTCAACAGCCTCATATCTTGCACCGTGCAGAAGATCAAGTCCGCGCTTCAGGCCTGAGAGAACGAGGAGGGTTCAGTCAAGAACGAACCTCGCCGCCCCCTCACTGAAGATGGAACGCTGAGCAATGGTGGTGGTTCGGGTATTGACTCCACCTCGGTACGAAGAAATCTTTCTCTTTTTTCTTTGCTAACTTTGGTTGGGGGGGGGTTTTGTTTTAGGGCTACTGTTAGAGCTTACTGGCCTTGTTAGATGGATGCATCTGCTTCTTTTGCTGGTCTTATCCTTAGAACAATGCTAACAAATAAGTTTAAAGTTTGAATTTATTTATTTATTTATGTTTTATCAATAGCTCCTTCAATTCATATTCGTTACTGTGAAGCTATAATAAAT

Network for GWHGAAEX012151

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.28	Homeobox	81	136	1.70E-19
PF01852.18	START	238	462	1.70E-40

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.620
SRP064423	SRR2545915	Juvenile tuber	4.750
SRP108465	SRR5643513	five period of Gastrodia elata	9.670
	SRR5643514	five period of Gastrodia elata	9.990
	SRR5643515	five period of Gastrodia elata	5.880
	SRR5643524	five period of Gastrodia elata	8.710
	SRR5643525	five period of Gastrodia elata	3.470
	SRR5643528	five period of Gastrodia elata	0.860
	SRR5643658	five period of Gastrodia elata	1.050
	SRR5643659	five period of Gastrodia elata	2.790
	SRR5643660	five period of Gastrodia elata	2.110
	SRR5643661	five period of Gastrodia elata	3.490
	SRR5643662	five period of Gastrodia elata	4.180
	SRR5643663	five period of Gastrodia elata	3.630
	SRR5643664	five period of Gastrodia elata	2.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.710
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.230
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.220
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.030
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.190
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.760
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.850
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.940
SRP279888	Gastro	Gastrodia elata tuber	6.09
	Juven	Juvenile tuber	8.71
	Mother_Gastro	Mother tuber of Gastrodia elata	10.63
	Mother_Juven	Mother tuber of Juvenile	10.16