Detail information of GWHGAAEX012153/evm.TU.scaffold_41.23


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG06860COP9 signalosome, subunit CSN1
nrgi|672159518|ref|XP_008799523.1|0PREDICTED: COP9 signalosome complex subunit 1 [Phoenix dactylifera]
Swissprottr|P45432|CSN1_ARATH0COP9 signalosome complex subunit 1
trEMBLtr|M0TPP6|M0TPP6_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P11930_001}
TAIRAT3G61140026S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004016857161723016+
Transcript Sequence

Network for GWHGAAEX012153

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10602.8RPN71152872.10E-57
PF01399.26PCI3054062.50E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms78.890
SRR2545915Juvenile tuber108.510
SRP108465SRR5643513five period of Gastrodia elata64.560
SRR5643514five period of Gastrodia elata61.620
SRR5643515five period of Gastrodia elata61.960
SRR5643524five period of Gastrodia elata62.620
SRR5643525five period of Gastrodia elata50.730
SRR5643528five period of Gastrodia elata47.160
SRR5643658five period of Gastrodia elata47.070
SRR5643659five period of Gastrodia elata110.470
SRR5643660five period of Gastrodia elata113.170
SRR5643661five period of Gastrodia elata124.910
SRR5643662five period of Gastrodia elata158.440
SRR5643663five period of Gastrodia elata129.730
SRR5643664five period of Gastrodia elata160.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_174.940
SRR6049655Rhizomagastrodiae_C368-T10_good_169.580
SRR6049656Rhizomagastrodiae_C368-T07_good_166.700
SRR6049657Rhizomagastrodiae_C368-T07_good_197.450
SRR6049658Rhizomagastrodiae_C368-T04_good_198.470
SRR6049659Rhizomagastrodiae_C368-T04_good_1125.250
SRR6049660Rhizomagastrodiae_C368-T01_good_189.680
SRR6049661Rhizomagastrodiae_C368-T04_good_1100.570
SRR6049662Rhizomagastrodiae_C368-T01_good_166.300
SRR6049663Rhizomagastrodiae_C368-T01_good_181.010
SRR6049664Rhizomagastrodiae_C368-T10_good_168.080
SRR6049665Rhizomagastrodiae_C368-T10_good_168.080
SRP279888GastroGastrodia elata tuber 117.54
JuvenJuvenile tuber91.00
Mother_GastroMother tuber of Gastrodia elata 46.81
Mother_JuvenMother tuber of Juvenile 70.25