Gene detail

Detail information of GWHGAAEX012158/evm.TU.scaffold_41.34

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743777591\|ref\|XP_010919231.1\|	0	PREDICTED: probable transcriptional regulator SLK3 [Elaeis guineensis]
Swissprot	tr\|F4JT98\|SLK3_ARATH	4.00E-145	Probable transcriptional regulator SLK3
trEMBL	tr\|U5DD57\|U5DD57_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN19357.1}
TAIR	AT5G62090	2.00E-133	SEUSS-like 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000040	2302912	2314049	+

Transcript Sequence
>GWHTAAEX012158 ATGAATCACAGAACCCTGAATAGTGCTGCAAATTCATCTGGACCTAGCATGGGAGCAAGCTCTCTTGTCACAGATGCTAATTCCTCCCATTCTGGCGGGCCACAGCTGCAGAGGAGCTCCAGCATAAACAATGAATCCTATACACATCTCCCGGCTTCCCCTTTGTCCTTCACTTCCAACAACATTTCCTCCTCCTCCGTTATGGATGGTTCATCGATTGTCCAGCAAAGTCCTCAGCAAGACCAGCTGCCAAAGCAAGGTAATTCTGGTAGTATTTCTCAGTCGATAATGCATGATACTGGAATGCTGCCCGCTGAGAAGAGACCAAGACTGGACATGCGGCAAGGAGATGTTTATCAGCAGCATGTTATACAGCAAATGCTTCAGAGGCAGCAAAACCCACAACTTCAGGCCATCATCCATCAGCAGAGGCTGGCACAGGCTGCACAGCAGCAGCAACAGCAACAGCAACAACACCAACAACAGATTTTGCAGGCGTTGCCACAACTGCAGCGAATCCAGGTACAACAACAAGGCCAGCAGCCTCGACAGGGCCCCTTGCAGATAGTATTGTCTCCTGCAAGACGTCCCTCTGATAGTGGATTGTGTGCTCGCAGACTTATGCAGTATATGTATCACCAAAGTCATCGACCTGCCGATAATTCAATAGCATACTGGAGAAAATTTGTTACCGAATACTTTGCACCAAAAGCAAAGAAAAGATGGTGCCTATCACTATATAACGGTGTGGGCAATCATGCGTTGTGCACTTTTCCTCAAGCTTCTCTGGATGCATGGCAATGTGGTATTTGTGGTTCTAAATCTGGAAAAGGCTTTGAGGCTACTTATGAAGTGCTTCCTAGGCTTAATCAAATCAAATTTGATCATGGGATTATTGACGAGCTTATATATCTTGAGTTGCCTCGTGAAGGCCGGCTTCCATCTGGGATGATGGTTTTGGAGTATGAAAAAGCTGTTCAAGAGAGTGTTTATGAGCAAATACGTGTAGTGCGTGAAGGCCAACTTCGAATAATTTTTACTCCTGATTTGAAGATTTTGTGTTGGGAGTTTTGTGCTCGGCGCCATGAAGAACTTTTTCCTCGTAGAATGATGGCACACCAAGTAAACCAATTGCTGCATGTTGCTCAAAAATATCAAGCTGCTGTTAATGAAAGTGGGACTTCTGGGCTTTCTGCCCAAGATCTACAGGCTAGCTGCAACATGTTTGTGGCAGCAGGACGACAACTTGCAAGAAATTTAGAGCTGCAGTCTCTAAATGATCTAGGCTTTTCAAAAAGATATGTTAGGTGTTTGCAGATATCGGAGGTTGTTAATAGTATGAAAGACCTGATTAATTTCAGCCAAGCCCACAAGATGGGACCTATAGATAGCCTGAAGAACTTTTCTCATTCTGCTTCTAAGCTCCATACCCAGAACACGAACGAGGCTGAACAGAATGCCCCCTCGTCCCAGAACCATTCAGTTGAGCAGGTCAAGGATAATAAGCTTGTTGCCAGCCAACCTGTTTTAAACAACCACATTGGAAACTCAAATCCAGCAGCTCGCTTCTTGAACAGCAGTACTCATACTGCCATGCCTATGAATAGCTACCAATATTTATCGAGAAACTCTGCAAATCCAGATGCAAATCATCTGCGCTCGGATGCCTCATTTTCTATTCTGAACCAGACGCTGCCACATCTACCATTTCAGGCTACAACTGCAAATTTGTCCCAGGCGAATAAAAGCCAAACATCATCCCAGTCAAATCATCATTTGCAGCAGCATATGATTCAACAGCTTTTGCAGGAAATGATGAACAAAGGAGCTCAGCAGCCCTCCTTGAATGCGGCTTCGCCTGCTGTTTTAAACTGTAATAATGTTACAGCAGCCAAGATTTCGGCTGGACTGGAAATCATCGTTAGTGAAACTTCCGGCGAGGCAAAAGGAGCTGTTATTCCTTGCAGTAGCGATGCTTCTAAGCCTTCTGCGAAAAGCATTGTTAACTCTTGTGTTGGAAGCAGTAACTTTAATGTAAAGCTGGATGCGTTGGAGAACATGAATCTTGGGGATCTTGAACCAGACATTTTAAGAGAATTCTCAGAAGATGGGTTTCAGTGGTGA

Network for GWHGAAEX012158

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01803.15	LIM_bind	206	466	1.90E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	84.980
SRP064423	SRR2545915	Juvenile tuber	84.570
SRP108465	SRR5643513	five period of Gastrodia elata	53.790
	SRR5643514	five period of Gastrodia elata	51.330
	SRR5643515	five period of Gastrodia elata	55.760
	SRR5643524	five period of Gastrodia elata	51.430
	SRR5643525	five period of Gastrodia elata	85.620
	SRR5643528	five period of Gastrodia elata	89.990
	SRR5643658	five period of Gastrodia elata	101.420
	SRR5643659	five period of Gastrodia elata	48.520
	SRR5643660	five period of Gastrodia elata	51.940
	SRR5643661	five period of Gastrodia elata	44.920
	SRR5643662	five period of Gastrodia elata	48.940
	SRR5643663	five period of Gastrodia elata	46.830
	SRR5643664	five period of Gastrodia elata	50.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	57.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	64.680
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	55.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	64.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	70.770
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	73.510
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	68.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	61.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	47.830
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	61.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	55.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	55.660
SRP279888	Gastro	Gastrodia elata tuber	49.14
	Juven	Juvenile tuber	66.47
	Mother_Gastro	Mother tuber of Gastrodia elata	74.79
	Mother_Juven	Mother tuber of Juvenile	61.66