Detail information of GWHGAAEX012167/evm.TU.scaffold_41.56


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|16329282|ref|NP_440010.1|9.00E-105geranylgeranyl pyrophosphate synthase [Synechocystis sp. PCC 6803]
KOGKOG07767.00E-138Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase
nrgi|500864634|gb|AGL91648.1|3.64E-142geranylgeranyl diphosphate synthase [Catharanthus roseus]
Swissprottr|P80042|GGPPS_CAPAN2.00E-143Geranylgeranyl pyrophosphate synthase, chloroplastic (Precursor)
trEMBLtr|T1RMV7|T1RMV7_CATRO1.00E-142Geranylgeranyl diphosphate synthase {ECO:0000313|EMBL:AGL91648.1}
TAIRAT4G368107.00E-138geranylgeranyl pyrophosphate synthase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004038428793844371-
Transcript Sequence

Network for GWHGAAEX012167

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00348.16polyprenyl_synt843211.90E-56
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13789GGPS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0008299Biological Processisoprenoid biosynthetic process

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.520
SRR2545915Juvenile tuber8.490
SRP108465SRR5643513five period of Gastrodia elata26.780
SRR5643514five period of Gastrodia elata22.560
SRR5643515five period of Gastrodia elata15.210
SRR5643524five period of Gastrodia elata15.990
SRR5643525five period of Gastrodia elata39.420
SRR5643528five period of Gastrodia elata32.430
SRR5643658five period of Gastrodia elata27.050
SRR5643659five period of Gastrodia elata67.870
SRR5643660five period of Gastrodia elata98.490
SRR5643661five period of Gastrodia elata92.150
SRR5643662five period of Gastrodia elata110.650
SRR5643663five period of Gastrodia elata160.580
SRR5643664five period of Gastrodia elata111.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.180
SRR6049655Rhizomagastrodiae_C368-T10_good_127.660
SRR6049656Rhizomagastrodiae_C368-T07_good_125.580
SRR6049657Rhizomagastrodiae_C368-T07_good_123.560
SRR6049658Rhizomagastrodiae_C368-T04_good_131.030
SRR6049659Rhizomagastrodiae_C368-T04_good_129.020
SRR6049660Rhizomagastrodiae_C368-T01_good_130.200
SRR6049661Rhizomagastrodiae_C368-T04_good_131.700
SRR6049662Rhizomagastrodiae_C368-T01_good_138.420
SRR6049663Rhizomagastrodiae_C368-T01_good_122.680
SRR6049664Rhizomagastrodiae_C368-T10_good_128.890
SRR6049665Rhizomagastrodiae_C368-T10_good_128.890
SRP279888GastroGastrodia elata tuber 123.88
JuvenJuvenile tuber93.84
Mother_GastroMother tuber of Gastrodia elata 30.55
Mother_JuvenMother tuber of Juvenile 53.55