Gene detail

Detail information of GWHGAAEX012168/evm.TU.scaffold_41.57

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|297568468\|ref\|YP_003689812.1\|	4.00E-07	MT-A70 family protein [Desulfurivibrio alkaliphilus AHT2]
KOG	KOG2356	2.00E-133	Transcriptional activator, adenine-specific DNA methyltransferase
nr	gi\|743860983\|ref\|XP_010943156.1\|	5.16E-165	PREDICTED: methyltransferase-like protein 2 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q8LFA9\|METL2_ARATH	3.00E-139	Methyltransferase-like protein 2
trEMBL	tr\|V4T9L5\|V4T9L5_9ROSI	5.00E-158	Uncharacterized protein {ECO:0000313\|EMBL:ESR48175.1}
TAIR	AT1G19340	2.00E-133	Methyltransferase MT-A70 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000040	3848980	3890368	-

Transcript Sequence
>GWHTAAEX012168 ATAATACAATTAGTCACGTAGAACCGAGCGCGAGCACATTGGGCGAAGGAGCATGGGTGCAGCAGTTTGTGAGGCATAAAGTGTGCGAGCATTATGGAGAAGGGTTGAGGCATCATCTCAGGTTTTTGCGAACTTACACAGGAAATACTTGATGGGCGGGATCTGCATAAAGACGGGAAAGCTCAAGATATATTTATAAGCGCCCATTTGATGATCACACTGATCACAATGGAGGAAAAACCCTCCCATGAGCTCTCCTCGTTCTTAAAATCGGGACTCTATCGTCTTCGGGAAAACAGCGCTGTCTTTATAGACCCCGTTCGTCTTCTCAATCTGTCTTACACCCGCTATTATATTTCTGCTTCCGGTTACTACTGCCGCAGCTTCGATCCGTCGGGGCAAGGGAGAGGAACGAACCTAGAAACGAATGCCTCCGGACCCTTGAAGAAGAAGAAAAAGCGGAAGAGAAGACGTCTCCATGACCTCAATGAGCATGAACTAATAATGGAGAGATGCCATCAGGAAATTAGGCCTTTGTTGCTGAAGGCTCAGGAGGCATTACTTGGAACAAGCGAGCTTCTCTCTTTTCTTCCTAATCTAATGAAAAACGAGAAGTTCAGTCTTGATAAAAGAGGGCTGGAGCAGAACTTTGTTGAACTGGGAAGGATATGGCAGGCACCTCTTTACGAGATAGCTATGCACATTGACGAGAACTCCAAGGAAGTGCAAGTGGAAGGTTTGCAACATGTGGAATCTAGTGGAAGAACGACTGTTCCTCTCTTCAATAACTTAATTAACAATGCTGCATCAACTGAAGTGGATGTTGAATTCCATGGCCGAAAATATATATTACCAAGAAGAAGCTGTTTTCATGTGTCTGATTTGAGACAAATCCATGATCTCATTCCAGGCTGTTCTGATCATGGCTTTAACATAATTGTTATTGATCCGCCATGGGAAAATGGAAGTGCTTATCAAAAATCTTTGTACCCGACATTACCAAACAGATACTTCCTGTACCTCCCTATCAAACAACTTACTCATACAGATGGGGCCCTAGTGGCATTATGGATGACAAACAGAGGGAAACTTCGTGCATTTGTTGAAAAAGAACTATTTCCAGCTTGGGGAGTGACAGACATCAGAACATCTTACTGGTTGAAGATAAAACCTGATGGTTCCATGCTTTGTGACTTGGATTTGGTTCACCACAAACCGTACGAGTACCTTCTTCTTGGCTATGTTAAAGAAAAGAAAACTGAACCTGGTTGCCTACAAAGTCTGCAAGACAACCAAATTTTCATCAGTATACCTGGCGCTTATTCACGGAAGCCTCCACTAGGAAAATTGCTGGTAGATTATGCTCCAGGTCCCAAACCTTCCAGGTGCATAGAACTCTTCGCCAGGGAACTTTTGGCTGAGTGGACTTCTTGGGGCAATGAGCCTCTTCACTTTCAGGACTCTGTATACTTTATTCAAAGCGAAGCTGCATGATAGCCTTCTTAGAGAAGTTCGATCACTTTGGATCCTCTTTGTGCAAGAACGATAAGTTGATGCCGTTAAACTTCTTCTGGGGAAGTGCTATGGATGTTCAGTAGCTTGTATGCTCACAGATTTCAATCCGTTGGACCTCTGCTAAGAGAAGCACAATGTTTGGTTGGCTATGGTAAGGGATATGACAAGTGCTGTCAGCAGCATGTTCAGGAACTACTAACAACACCAAATAGAATCACATGGAGGTAAATGACTTGCGGATGCCTGCAGAGATCGAGAGGAGCCAGCCTTAAGGTGTTAATTAAGAGGAGCTCAGCAGTTATCATGTAGAAGGCTGGCTCATATGAGGTGAAATCCTTCCTTACAAGCATCATACAAATGGGATATAAATCGCCCCCAAATAAACATGATACAGATGTGCGCTTTTTTTTTATATTTAATATGTTGGGCGTTCTCTATGCACACATAGTTAGTGGTCCCTTTCATAATTCAATTTACTCCCAAATAAGATAATGCC

Network for GWHGAAEX012168

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05063.13	MT-A70	240	411	1.20E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0032259	Biological Process	methylation
GO:0003676	Molecular Function	nucleic acid binding
GO:0008168	Molecular Function	methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.280
SRP064423	SRR2545915	Juvenile tuber	11.650
SRP108465	SRR5643513	five period of Gastrodia elata	5.050
	SRR5643514	five period of Gastrodia elata	4.470
	SRR5643515	five period of Gastrodia elata	4.090
	SRR5643524	five period of Gastrodia elata	4.390
	SRR5643525	five period of Gastrodia elata	5.670
	SRR5643528	five period of Gastrodia elata	4.930
	SRR5643658	five period of Gastrodia elata	5.320
	SRR5643659	five period of Gastrodia elata	6.960
	SRR5643660	five period of Gastrodia elata	6.620
	SRR5643661	five period of Gastrodia elata	8.780
	SRR5643662	five period of Gastrodia elata	6.920
	SRR5643663	five period of Gastrodia elata	7.450
	SRR5643664	five period of Gastrodia elata	7.380
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.480
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.320
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.600
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.240
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.240
SRP279888	Gastro	Gastrodia elata tuber	8.27
	Juven	Juvenile tuber	13.43
	Mother_Gastro	Mother tuber of Gastrodia elata	6.33
	Mother_Juven	Mother tuber of Juvenile	12.47