Gene detail

Detail information of GWHGAAEX012171/evm.TU.scaffold_41.62

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743860968\|ref\|XP_010943152.1\|	5.32E-166	PREDICTED: crt homolog 3 [Elaeis guineensis]
trEMBL	tr\|M0TV65\|M0TV65_MUSAM	1.00E-159	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P31130_001}
TAIR	AT4G24460	7.00E-100	CRT (chloroquine-resistance transporter)-like transporter 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000040	4020354	4066563	+

Transcript Sequence
>GWHTAAEX012171 CAACTTGCTCAGAATCCTTCAAAACAAGTTTGGTTCCTGAAATACCGCACCGCGGCGTCGGCATGGAGCTTTTATCCTCGGCTATTCGTCCAATAGCTTCTTCCCCTTCTTTACGGTACCGATCCTTTTCTGCGAGGCCCGTGAGCTGTTCACTTCCCGCAAGAACAAGCTTTAGAAAACCACATCGAGTTTCCAATGAAGCGCACTGCAGCAAAATTGATTTCATTTGTAGGGTTTATCAAGGAGGCAACTCCACTTTATCTATTCTTTTGATGAGGCCTCGTCGGTTTTTTACTGCCGTCGCTTCAAAGAGGGACACGGAATTGAATTCTGGCGTCGACCATGCACGTAAGGTCGCGGCGGTTGCTGTTACGATAATTCTTGCTGTGACAAATCGAGTCCTCTATAAGCTTGCTCTCGTTCCCATGAGGCACTACCCTTTCTTTTTGGCTCAGATTACAACCTTCGGGTATGTGGCAGTATATTTCTCTATTCTTTATGTAAGATACACCACTGGGATTGTTTCCCAAGAAATGCTGGAAGTTCCAAAATCTCGATTTATGGCTATAGGTCTTCTAGAGGCCCTTGGAGTTGCTTGTGGGATGTCTGCTGGAGCTGTGCTTCCTGGGCCTGCTATACCAATATTATCTCAGACTTTCCTGGTTTGGCAGCTTGTCTTGTCTGTAATGATATTAGGACGAAGGTATTCATTAAATGAAATTCTTGGATGCTTACTTGTAACAGCAGGAGTGATCTTAGCTGTAACGAGTGGGTCTTTTGATGACCAATTGCTATCCGGTATTGAATTTCTATGGCCAACATTAATGGTTACTTCTTCTGCATTTCATGCTGGTGCATCAATTCTTAAGGAGTCTGTCTTCATTGATGGCGAAAAGCGTCTTCAGGGAAAATCCCTTGATATATTTGTAGTTAATTCCTTTGGATCTGGATTCCAGGCTTTGTTTGTATTTCTGCTTCTGCCTTTTCTGTCCAATTTGACAGGAATTCCTTTCACCGAACTGCCACATTATCTTAAGAATGGTGCTGCATGTTTTCTGAATATTGGGGGAAATATGGAAGGTTGTGAAGGCGCCCCATTTCTGCCTCTACTTTTCATACTAACAAACATGGCTTTCAACATATCTTTGCTTAATCTGGTGAAGATGTCGTCTGCGCTGCTTACTTCTCTTTCAATTACTTTAGCAGTGCCCCTCTCAATATTCGCTCTCTCCCTTCCCTTGCCTTATATCCCCGAGGGCACTAACTTGAATGCATTTTTCATCGTTGGAACTGCGATTCTTGTGTCGGGTTTGATGCTTTATAGCCTTCCCAAATCAGACAATCAGCGCCACAGAAATGATTGAAGATAAGATATGTGCAAAATTCCTGTATATGTGTGTTTTTGTTAAAATTCCACTTGTCTTGCAAAATGTATATATGTTAAATATGAAATTTACATAATTTCACATTTCAAGCTGGCTTCGGGCAGTTCCCAAGCTGGGCTTCGGGCAGTTCCCAAGCTGGGCTTGAAAGTGATTCTAGCAAAAAACCAATGAACTATATACCCTACGTACACACATACACACATACACACGTGTGTGTGTGTGCGCATGCATTTAGTTGGGTCAATGCATTTAGCTAGCCATATTAAAGAATTATATTATAATAATCATGTTAATTTTTCTTAGTTCTTTTAGTAAAATGTTTTGTTAGAAAGAATTTGCTCTACTTTTATATCTGACAAAAAATGTTAATCAGCCTATCTTAAAGTGATAGATAATTGGAGAAATAAAAGACCATAGAAGGTTAAGCACAGGCTGGCCTCTAAAATAAAATCACTTTAGATGGCAGGCAAAAAACATTTTGTTCAAAATCTGCTTTGTTAGAGAAGATTATGGGAGGATTATTCTTGATTTCTATATCAGAATATCATGATTAAAGCTCAATCTGTTATATAAAAACAACCTTTCTTCAACTTGGACATTGCAATGGTGAAGGCAAACCGAAGTCTATAAAGGAGTGTGTTGCAGAAGTAACTTGGAGTGTTAAAAGAACCAAAGTCTATAAAGAAGAAGCCTAAGAAGCAATATTAAATTTAGAGAATTCCAAAATCCTCAGAAAACAAAAAGATAAAATCAAGAAGATACCTAGTTTGTATGAGTCTAAGAAGAAACAACAGCAATAACAGCCTAATTTTCACATTTGGCTGTATTTTTTATTTACTAATGCAATAAATGAATGTGTTGGATTTCAAGTTTTTGTTTTCCTTTGACTCTTAAGCTTTAAAATTTTGATTCATATCAGTGTGTCTTTGAATTTTAAGTACTAGCTGAAATTTTTTGGCCTGTTTAGATTGTCTGCTGGAATTGTTCAAACATTTCTATGTAGATTTTTAGTCTGTATAATCTTTCATTTAGTATTGAGTTCTCTTTTTATCTTTGTGTGTGATCTTGGGTGAGCTTGTGTCTTGTGGTGCTTTGCCTCTTAGAGGTAGTGGCGTTGTTATGGCTGTCAGACCCCCCTTCAGAATCTGCTTTCAATGTTTAGTTTTGGATCAAAATTCGTCCGCATTGATATTAAGATTAACTTTGTTTAATGCTTGACTAGATGATACTCATACTAAATATAAGATCTAGAAAATTTAGTTTCACTAAGCTAAAATTTTATTAAGAAATATTATATTTTAAATTACATGTACAAAATTCAGAGATTCCATTGAAATGTCTTGGATCATCATAAGGATGCATAGAAAATATCATCTGCAAAATTAACTAAGCTTTCTAAGTTCTGTTTTCATAAACTCATTTAAGTTAGTAATCTTATTCGAAAATTCAACTTTGGTCATAAACGGTGGTATCTGGCACAAAAACTACGACTGCTATTACATTTGGACATTGTGTTCAGACATGCAATAGTGTTCGCACATATGGGTGCTCCAATGCTAGAAAAATTGTCAAGCTTTTATTTAAAAGTCATGCTTTCTATGAGGGACAGCATATCGTGCCTTGTTAATAGGGCTGGCTTCGAGTCGAGTC

Network for GWHGAAEX012171

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08627.9	CRT-like	101	420	3.00E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.300
SRP064423	SRR2545915	Juvenile tuber	11.860
SRP108465	SRR5643513	five period of Gastrodia elata	8.910
	SRR5643514	five period of Gastrodia elata	10.700
	SRR5643515	five period of Gastrodia elata	10.350
	SRR5643524	five period of Gastrodia elata	11.410
	SRR5643525	five period of Gastrodia elata	15.210
	SRR5643528	five period of Gastrodia elata	12.290
	SRR5643658	five period of Gastrodia elata	24.030
	SRR5643659	five period of Gastrodia elata	6.200
	SRR5643660	five period of Gastrodia elata	6.830
	SRR5643661	five period of Gastrodia elata	6.130
	SRR5643662	five period of Gastrodia elata	8.930
	SRR5643663	five period of Gastrodia elata	8.520
	SRR5643664	five period of Gastrodia elata	8.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.350
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.890
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.080
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.540
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.480
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.480
SRP279888	Gastro	Gastrodia elata tuber	7.35
	Juven	Juvenile tuber	11.77
	Mother_Gastro	Mother tuber of Gastrodia elata	13.19
	Mother_Juven	Mother tuber of Juvenile	12.17