Gene detail

Detail information of GWHGAAEX012172/evm.TU.scaffold_41.63

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4162	Predicted calmodulin-binding protein
nr	gi\|743846982\|ref\|XP_010938984.1\|	PREDICTED: tetratricopeptide repeat protein 7A [Elaeis guineensis]
trEMBL	tr\|F6H1A1\|F6H1A1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45752.1}
TAIR	AT1G27460	no pollen germination related 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000040	4090303	4113251	+

Transcript Sequence
>GWHTAAEX012172 AGGCCGTAGCTTCTTCTTCCAAACCCATACTCCGTTTCGCTGATAGGACAAAAAAGTCGTGTCCCGTTTGCAGACAACCTCATACCTTTTCATTTCTATCCCGATCTGTCAGATAAGATGCCATTATCCAAGCGACTGTAAGGATATCAAAGTGGGAGAAGATACTTCAAGATCAAGATGCTTGAGCTTTCAAGATAATGTCAAGCTAGAGTGGAAAGATTGCCAACGTCAAGTAAGAAAGTTGAAGCGGGTGTTCGGCTATGGTCTCCACCATGTTGTGTGCTTGCTCGGGCGAACGAGAACGGGTCCATTTTGATGAGGCTCCTCAGTCGCCAGAGTCACTTGCAACCAGGGACTTCTCTATCAGTGGCTTTTCATCAAGAACTGGTGATTTTGAAGGAAAGGCTGACATTAGCCAGCATGTTGATGATGTAGAAGCAGCTTTGAAAGAGGGTCTTTCGTTAAATTACGAGGAAGCTCGGGCATTGTTAGGTCGTTTGGAATATCAGAGAGGAAACTTTGATGCAGCGTTGCAAGTGTTTCAGGGGATTGACATTCCGGTATTGAGGCCAAGAATGATTAAGGCGATTGCCGAAAGAACAAAACAGAGAAAAGTTCGTTCCAAGGTGGAGATCTTGCAGGTGAACCTAATGTCCTGGCATTCTGTTAGTCTACTACTGGAGGCAATTTTACTTAAATCAAAATCTCTGGAAGAGCTTGGACGCTTTCAAGAGGCTGCAACCGAATGTAAATTTATTCTCGACATTGTCGAATCTGCGTGGACCGATGGTGTTCCTGCCGGTGTCGGAGACAAGTGTAAGTTGAAAGAAATGTTCCACAAAGCTCTCCATCTGCTTCCCAGGCTCTGGAAACAGGCTGGTCTCCTTGATGAAGCAGTTTCTACCTATCGCCGTGCATTAACCAAGCCTTGGGATTTGGGTCATCAGGGATGCGCCAGCCTTCAAAAAGATTTAGCTGTTACTTTGCTTTACGGAGGAAGTGAGACACCGCCTTTCCCTCCCCATTTGCAAGAACTGTGGGGCTTTCAAAGCCCCAAAAATAGAACTGAGGAAGCAATTCTCCTACTCTGCATTCTTGTTGGAAAGGCTGCATCAATGGAAATAAGATGGGATCCCGAAATCATGGACCATCTCACCTTTGCACTGTTGCTTTCAGGACAGTCTGAATCTCTGGCCTTCTATATTGAACAAATGCTTCCTGGCATGCATAGCCGACGTGAAAGATGGTACATTCTTGCTCTCTGTTACAGTGCCGCGTGTCTTGATTCTCCTGCATTAAACCTTCTAAGAAAGGCTTCAGGCCCTTCAGAAAAAGGGCACAAGGATCATTTTCTAGTCCTTGCTTTAGCGGCCAAGCTGTGCCTCAGAAATCCTGATCATGCTCATGAAGGTTTGCGTTTTGCCAAAAGGGCAGTCAAATGTTCCATTGAGCAGCAAAAGAGGCATCACCTGATCGGAGTGGCCTGTCACCTGATGGGTTCCTGTTACAGATATCGTGCTGAAACCTCAAATTCTGATGCTGAAAGATCAAGTCTGGAGCGAGAATCCCTGAACTCGCTTCAGTGTGCTGAAAGCATCGAGAAAAATGACCCTGGGGTGACTTATAGCATAGCTCTGGAGCATGCGATTCGAAGGAATCATAACTTGGCAAGACAGTGTGCAATCAGGTATCTCGATATGACAGCCGGTTCTTCAGTGAGAGGATGGAAGCTGTTAGCTCTTGTGGTTTCGGCCGAGCAGAATCTGAAGGAGGCAGAAACAATTGTTGATCTCTCCATCGATGAATCTGGGAACACGGAGCAGATGGAGCTGTTAAGGCTGAAGGCCATCCTTCAGGTTGCTCAGGAAGAGCTCAAGGGAGCTGTAGAAACTTACAGGTTTCTGCTTGCTATGTTTCAAGCTCAGAGAGGAAAACAACCATGGCATACTGATTCTGAGCTTGAAGGCCAGAAAAGACTGGAAATGGAAACGTGGCTAGACTTGGCGTCCGTCTATTCCAAGCTCGGGCTATGGGGTGACTCCAACATTTGTTTGAATAAAGCTAAATTGCTTGGTTATTTTTCTCCAAGAACTTGGCTAACAACAGGAAATCTATTTGAAGCCCAATCATTACATAAGGAGGCACTAGCGGCCTTTTTTGTGTCACTGTCACTTGAATCAAACCACATCCCTAGCATGGTGTCTGCAGCTGCGGTCCTGAGGAGATTTGGCGATCAAAGCCTTCCAATTGCGCGGAGCTTTTTGATGGGCGCCCTTCAAATTGATCGGACGAATCATGATGCCTGGCTGAATCTGGGTTTTGTGGCCAAAGAGGAGGGATCTCTGGAGAAAGCTGCGGACTGTTTTCAAGCAGCCTATGAGCTCAGTCTCTCATCTCCTGCCATGGACTTCGTGTGCATCACTTAAAGCAGGTGGGAGATTTTCAAATTCTTTTTTAAATTGATGTGAATATGTTAAGAGAAATCAACTTGTAGGCATGTCAGGGTTACTACAATGAATGATTAATGTATAGATTGAGTGGGCGCAGCTCTTTGGTTCACTGAAGCATAATGCGTGTTAAAGTAGTGTAGGTATTATAATTTGAAATTAACGATGAAGATTTTCTCAATAAAAGTATCGTGTATGGATTGGTTTTTTGATGTGATATCAATATACCATAAATGCCAGCAAAATCCAATGTATTATATCGTATTATTCCAATGATATATGCTTTTAATGTATCGATTTTTTA

Network for GWHGAAEX012172

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.110
SRP064423	SRR2545915	Juvenile tuber	8.200
SRP108465	SRR5643513	five period of Gastrodia elata	23.260
	SRR5643514	five period of Gastrodia elata	21.770
	SRR5643515	five period of Gastrodia elata	23.290
	SRR5643524	five period of Gastrodia elata	22.780
	SRR5643525	five period of Gastrodia elata	33.720
	SRR5643528	five period of Gastrodia elata	35.500
	SRR5643658	five period of Gastrodia elata	40.730
	SRR5643659	five period of Gastrodia elata	21.430
	SRR5643660	five period of Gastrodia elata	21.230
	SRR5643661	five period of Gastrodia elata	24.010
	SRR5643662	five period of Gastrodia elata	24.530
	SRR5643663	five period of Gastrodia elata	22.620
	SRR5643664	five period of Gastrodia elata	23.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.450
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.600
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.070
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.070
SRP279888	Gastro	Gastrodia elata tuber	16.62
	Juven	Juvenile tuber	24.03
	Mother_Gastro	Mother tuber of Gastrodia elata	31.55
	Mother_Juven	Mother tuber of Juvenile	32.99