Detail information of GWHGAAEX012173/evm.TU.scaffold_41.64


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|18978426|ref|NP_579783.1|3.00E-2530S ribosomal protein S3 [Pyrococcus furiosus DSM 3638]
KOGKOG16287.00E-15640S ribosomal protein S3A
nrgi|117671302|gb|ABK56834.1|1.19E-170RPS3 [Cymbidium hybrid cultivar]
Swissprottr|P49397|RS3A_ORYSJ7.00E-16340S ribosomal protein S3a {ECO:0000255|HAMAP-Rule:MF_03122}
trEMBLtr|A0N0S0|A0N0S0_9ASPA4.00E-17140S ribosomal protein S3a {ECO:0000256|HAMAP-Rule:MF_03122}
TAIRAT4G346707.00E-156Ribosomal protein S3Ae

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004041137154118859-
Transcript Sequence

Network for GWHGAAEX012173

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01015.17Ribosomal_S3Ae152218.50E-100
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02984RP-S3Ae, RPS3A Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms273.370
SRR2545915Juvenile tuber271.540
SRP108465SRR5643513five period of Gastrodia elata410.690
SRR5643514five period of Gastrodia elata394.950
SRR5643515five period of Gastrodia elata379.020
SRR5643524five period of Gastrodia elata384.410
SRR5643525five period of Gastrodia elata253.360
SRR5643528five period of Gastrodia elata305.440
SRR5643658five period of Gastrodia elata221.890
SRR5643659five period of Gastrodia elata478.880
SRR5643660five period of Gastrodia elata488.790
SRR5643661five period of Gastrodia elata526.830
SRR5643662five period of Gastrodia elata446.100
SRR5643663five period of Gastrodia elata426.310
SRR5643664five period of Gastrodia elata441.380
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1393.880
SRR6049655Rhizomagastrodiae_C368-T10_good_1368.330
SRR6049656Rhizomagastrodiae_C368-T07_good_1434.450
SRR6049657Rhizomagastrodiae_C368-T07_good_1354.670
SRR6049658Rhizomagastrodiae_C368-T04_good_1359.830
SRR6049659Rhizomagastrodiae_C368-T04_good_1301.470
SRR6049660Rhizomagastrodiae_C368-T01_good_1366.930
SRR6049661Rhizomagastrodiae_C368-T04_good_1350.950
SRR6049662Rhizomagastrodiae_C368-T01_good_1505.790
SRR6049663Rhizomagastrodiae_C368-T01_good_1440.670
SRR6049664Rhizomagastrodiae_C368-T10_good_1541.640
SRR6049665Rhizomagastrodiae_C368-T10_good_1541.640
SRP279888GastroGastrodia elata tuber 400.32
JuvenJuvenile tuber351.88
Mother_GastroMother tuber of Gastrodia elata 163.68
Mother_JuvenMother tuber of Juvenile 229.22