Detail information of GWHGAAEX012183/evm.TU.scaffold_41.76
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-171 | FOG: PPR repeat |
| nr | gi|672177512|ref|XP_008808854.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g16880-like [Phoenix dactylifera] |
| Swissprot | tr|Q9ZVX5|PP156_ARATH | 9.00E-172 | Pentatricopeptide repeat-containing protein At2g16880 |
| trEMBL | tr|I1H8H2|I1H8H2_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G71082.1} |
| TAIR | AT2G16880 | 3.00E-171 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000040 | 4427316 | 4430013 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012183
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 150 | 173 | 0.68 |
| PF01535.19 | PPR | 215 | 245 | 0.008 |
| PF13041.5 | PPR_2 | 247 | 296 | 1.40E-17 |
| PF13041.5 | PPR_2 | 317 | 364 | 7.20E-16 |
| PF12854.6 | PPR_1 | 383 | 409 | 1.90E-05 |
| PF13041.5 | PPR_2 | 422 | 471 | 9.60E-20 |
| PF13041.5 | PPR_2 | 492 | 541 | 2.10E-13 |
| PF13041.5 | PPR_2 | 562 | 611 | 7.20E-15 |
| PF12854.6 | PPR_1 | 628 | 661 | 4.10E-12 |
| PF01535.19 | PPR | 747 | 770 | 0.017 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.900 |
| SRR2545915 | Juvenile tuber | 5.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.350 |
| SRR5643514 | five period of Gastrodia elata | 5.460 | |
| SRR5643515 | five period of Gastrodia elata | 5.670 | |
| SRR5643524 | five period of Gastrodia elata | 7.390 | |
| SRR5643525 | five period of Gastrodia elata | 10.340 | |
| SRR5643528 | five period of Gastrodia elata | 8.580 | |
| SRR5643658 | five period of Gastrodia elata | 10.580 | |
| SRR5643659 | five period of Gastrodia elata | 8.020 | |
| SRR5643660 | five period of Gastrodia elata | 7.180 | |
| SRR5643661 | five period of Gastrodia elata | 6.750 | |
| SRR5643662 | five period of Gastrodia elata | 8.390 | |
| SRR5643663 | five period of Gastrodia elata | 7.190 | |
| SRR5643664 | five period of Gastrodia elata | 8.460 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.24 |
| Juven | Juvenile tuber | 5.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.54 | |
| Mother_Juven | Mother tuber of Juvenile | 3.09 |