Gene detail

Detail information of GWHGAAEX012185/evm.TU.scaffold_41.79

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|156938218\|ref\|YP_001436014.1\|	3.00E-155	ATPase AAA [Ignicoccus hospitalis KIN4/I]
KOG	KOG0733	0	Nuclear AAA ATPase (VCP subfamily)
nr	gi\|672134400\|ref\|XP_008790849.1\|	0	PREDICTED: cell division control protein 48 homolog C-like [Phoenix dactylifera]
Swissprot	tr\|Q9SS94\|CD48C_ARATH	0	Cell division control protein 48 homolog C
trEMBL	tr\|M0SKS3\|M0SKS3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P03560_001}
TAIR	AT3G01610	0	cell division cycle 48C

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000040	4504196	4534930	-

Transcript Sequence
>GWHTAAEX012185 TTGTTATTATAGTGGGTAAAATTGCTCGTTTCAAGGGCACATTAAGCGGATTTTGGGACCGATTGCGTGGGTTTCGTTGCGATGGGAAAGCGGCTGCTTCGCTGCGGCGGCCGCTCGCCTTTATCGACATCCTCCGTCGTAAACCGCTCGATACTTATTCGCCGCATCAAATCTCTAAATCTAAATTCCTCCTCTGATCCAGATATCGTCGCTCAACGCCTTCGTGAGAACTATCCCGACTACGCTCGCATTAAACTTCAGCCTTTTTCCGCCCGACTCCGCGAAGTCCTAAAACACCTCCGCAACATCTCTACTAAACTCCCCGCTTCCGGCGAAGCTTCTCCATCCTCTTTTTCCGATGGCGATAAGCCGCCTCGCAAAAAGCGCGGCAAGGAGGATGCATTTGAAGAGCGGCATTTCAGACGATTGCAGAGAAACCAGGCAGCTTCTTCCTCGCCTTCCGATTCATCAGATGAATCGACGTCAACTTCCGATGATGCCTCTTTTGAGGATAATGTGGAACCGGAGTTCGACGTGACGAAATCCATACTTAGGGAGAGGTACGCCAAACAATCGGAGCAGAGATTTAGAGCAGAAAACGCAGAAAAGAATGTCGAGATTGAGGCGGTTTCTGATGACAAAGGGAAGATTCTGATAGAGGTGACAAAGGGCGGCGAGAGTGGGAAGGAGATTGCTGCAGCAGGCTTGGGTGTTGGCGGCAGGGATCATAAGAACAATGCAGTGAGTGTGGAGATGGGAAGGGAAGGGCCGATGTTTCGAGATCTCGGAGGGATGACTGCTGTTTTGGAAGATTTGATGATGGAAGTGATTGTGCCGTTGTGCCATCCGGAGCTGCCTAGAAGGCTCGGGGTGAGACCGTTGGCGGGAATATTATTGCACGGCCCGCCTGGGTGTGGGAAGACAAAGCTTGCTCATTCAATTGCCAATGAGACTGGTGTGCCATTCTACAAACTATCGGCTACCGAAATTGTTTCTGGTGTCTCAGGTGCTTCTGAAGAAAATATACGGGACCTTTTCAACAAGGCTTATCGTTCTGCTCCTTCGATTGTGTTCATTGATGAGATTGATGCCATTGCATCCAAGAGGGAAAACTTGCAAAGGGAGATGGAACGCAGAATTGTGACACAACTTATGACATGCATGGATGAGTCTCACCAAACTCTGAGAGCAGTTGATAGTGATTCTGGCCCAAAAATGGCCGATACTACAACAGATAAAAGGCCTGGCTATGTTATTGTAATTGGAGCTACAAATAGGCCTGATGCTATTGACCAAGCTTTGAGAAGACCTGGACGCTTTGATAAAGAGATAGCTTTAGGTGTTCCTGATGAGATGGCCCGTGCAGAAATATTGTCAGTTCTGACTCGTAATCTTAGAATTGAGGGTGGATTTGACTGCTTCATGATAGCCAGGTTAACACCAGGTTTTGTTGGCGCTGATTTGGCAGCATTAGTGAATAAAGCTGGGAATCTGGCTATGAAGAGAATAGTTGATGAAAGAAGATGTCAACTTACTGAAGGGCATGAGGAAAATATTGATTGGTGGAGGCATCCTTGGTCACCGGCAGAAATTGAGAATCTTAGTATTACAAAATTTGACTTCGAGGAAGCTGCTAGACTGGTTCAGCCATCTACTAGGAGAGAGGGATTTTCTTCAATTCCTCAAGTCAAATGGGAAGATGTTGGTGGCCTTGATTCATTGAGGAAAGCATTTGATCGTTACATTGTTCAACTCATAAAGCACCCTGAGGATTATAAGGAACTTGGGGTCAACATGGAGGTTGGTTTTCTGCTTTATGGGCCTCCAGGATGTGGTAAAACATTGATTGCGAAGGCTGTTGCTAATGAAGCAGGCGCCAACTTTATACACATCAAGGGTCCTGAAATTTTGAGGAAATATGTTGGAGAAAGTGAGCAAGAAGTTAGAACAATATTTAACCGTGCGAGAACTTGTTCTCCATGCATACTTTTCTTTGATGAGGTAGATGCGATAACACCAAAGCGTGGACGAGAAGGAGCATGGGTTGTGGAACGGGCCCTGAACCAGTTACTTATAGAACTAGATGGCGCTGAACAGAGGCATGGTGTTTATGTCATTGGAGCTACAAACAGACTTGAAGTGATCGATCCTGCAGTACTGCGGCCTGGTAGATTTGGAAGACTCTTTTATGTTCCTCTTCCAAGCGCTGATGAACGGGGAATGATTTTAAAAGCACTTGCTCGTAAAAAGCCTGTTTCTCCAGATGTTGATTTCAATGCCCTTGCTTGTAATGAGGCGTGCAGGAATCTTACTGGGGCTGATCTTGCTGCTCTGGTGAATGAAGCTGCCATGACTGTCAAGGAGGAAAAACAAATCTACGTGGAACAAGGGATTTGGCTCAATAAACCGTTGGTAATTAAGACATCACATTTTGACAAGGCTCTTCAAAAGATAGTCCCATCAGTTTCAGAAGAGCAAAGGCGTTACTACGAGGCCCTGTCGCAAAAATTCAGATCTGTATGACAAGAATCTGTTCTGCTGGGCGGCGCTCAAGTTTCCTCTTTTTTATTGATTTAGCTGCTGAATAATTAGATAGCATTTGCATAATTGATTAAATCTGTTGCGTGGACGTTATTTTCTAGTGTTGTTGTTTTAAGCTCAACAGCTGTTTAGATGGTGTAGCTATTTATTTATTGAATAGTGATAATTCATGTAAAAAATATGTAATAGTCTAGTTAATTTCATTAATTTGGAGCTTAGTTTTATTGTTGATACAATTTGTTACCTTAGCTTAGATCAAATTAAATAGCAATTAATTACATACATGAT

Network for GWHGAAEX012185

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16725.4	Nucleolin_bd	21	76	2.70E-07
PF00004.28	AAA	270	419	5.40E-40
PF00004.28	AAA	577	705	8.20E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14571	RIX7, NVL	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.800
SRP064423	SRR2545915	Juvenile tuber	38.060
SRP108465	SRR5643513	five period of Gastrodia elata	32.340
	SRR5643514	five period of Gastrodia elata	30.830
	SRR5643515	five period of Gastrodia elata	25.450
	SRR5643524	five period of Gastrodia elata	30.340
	SRR5643525	five period of Gastrodia elata	17.330
	SRR5643528	five period of Gastrodia elata	13.750
	SRR5643658	five period of Gastrodia elata	18.800
	SRR5643659	five period of Gastrodia elata	25.960
	SRR5643660	five period of Gastrodia elata	28.250
	SRR5643661	five period of Gastrodia elata	28.490
	SRR5643662	five period of Gastrodia elata	24.630
	SRR5643663	five period of Gastrodia elata	24.220
	SRR5643664	five period of Gastrodia elata	25.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.590
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.200
SRP279888	Gastro	Gastrodia elata tuber	29.43
	Juven	Juvenile tuber	69.02
	Mother_Gastro	Mother tuber of Gastrodia elata	20.07
	Mother_Juven	Mother tuber of Juvenile	37.64