Detail information of GWHGAAEX012186/evm.TU.scaffold_41.80
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672127517|ref|XP_008787226.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g25360-like [Phoenix dactylifera] |
| Swissprot | tr|Q9FRI5|PPR57_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g25360 |
| trEMBL | tr|F6H072|F6H072_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB46020.1} |
| TAIR | AT1G25360 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000040 | 4597534 | 4600857 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012186
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 94 | 115 | 0.2 |
| PF13041.5 | PPR_2 | 122 | 167 | 1.30E-11 |
| PF01535.19 | PPR | 231 | 257 | 0.074 |
| PF13041.5 | PPR_2 | 261 | 307 | 1.60E-13 |
| PF01535.19 | PPR | 366 | 393 | 0.0038 |
| PF13041.5 | PPR_2 | 399 | 441 | 2.70E-07 |
| PF01535.19 | PPR | 470 | 493 | 0.11 |
| PF13041.5 | PPR_2 | 497 | 542 | 1.50E-11 |
| PF01535.19 | PPR | 573 | 594 | 0.054 |
| PF01535.19 | PPR | 636 | 665 | 0.39 |
| PF14432.5 | DYW_deaminase | 669 | 793 | 3.60E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.650 |
| SRR2545915 | Juvenile tuber | 3.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.010 |
| SRR5643514 | five period of Gastrodia elata | 3.040 | |
| SRR5643515 | five period of Gastrodia elata | 2.670 | |
| SRR5643524 | five period of Gastrodia elata | 3.140 | |
| SRR5643525 | five period of Gastrodia elata | 1.130 | |
| SRR5643528 | five period of Gastrodia elata | 0.380 | |
| SRR5643658 | five period of Gastrodia elata | 0.720 | |
| SRR5643659 | five period of Gastrodia elata | 4.970 | |
| SRR5643660 | five period of Gastrodia elata | 4.650 | |
| SRR5643661 | five period of Gastrodia elata | 6.350 | |
| SRR5643662 | five period of Gastrodia elata | 5.500 | |
| SRR5643663 | five period of Gastrodia elata | 5.560 | |
| SRR5643664 | five period of Gastrodia elata | 5.610 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.380 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.32 |
| Juven | Juvenile tuber | 2.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.56 | |
| Mother_Juven | Mother tuber of Juvenile | 0.54 |