Gene detail

Detail information of GWHGAAEX012187/evm.TU.scaffold_41.81

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672171255\|ref\|XP_008805693.1\|	PREDICTED: vacuolar-sorting receptor 3-like [Phoenix dactylifera]
Swissprot	tr\|O80977\|VSR3_ARATH	Vacuolar-sorting receptor 3 (Precursor)
trEMBL	tr\|Q339K4\|Q339K4_ORYSJ	Vacuolar sorting receptor 1, putative, expressed {ECO:0000313\|EMBL:ABB47273.1}
TAIR	AT2G14740	vaculolar sorting receptor 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000040	4661687	4680871	+

Transcript Sequence
>GWHTAAEX012187 GTATCGGGCTCCTATGCAGGTACGTCACTCTACGGCGTTAATTGCTATGTTCGCTCCCCACCATGAGCTGCGGCGAATCTACCGTCATTACGTCGCCATCTAAATCCAACGCTCAATATTCACCAACATAGTAACTCCGTGACACTCGGCAATACTGTCACTAAAAAGATTCTTTTCTCCTCAACTTCCTGACCGACGACCGACCATATTGGAACTAAAAAACCCTCCTGTCGTAACTACAAGCTTGATTTTCTCACCCTCATTTGCTCGTTTCAAATATCCGGATCTGCTGTATTCCCTTGTTCTCCCCTCCCAATCGCTTGAGCGAGAGGGATGGGCGTATTTTCGGAGAGTCGGCGTCGCTTGTTAGGATTAGTGATGGCTGTATTGACGGCGGCGATTCCCGCTGTCGGGAGGTTTGTTGTGGAGAAGAACAGTTTGATGGTGACCTCGCCACCGGATATGCGGGGGAAGCACGACAGCGCTATTGGGAACTTCGGGATTCCGCAGTACGGAGGGAGTATGTCCGGAGCAGTTGTTTACCCAAAGGATAATCAGCTTGCGTGCGATGAGTTTAGCTCTTCGTTTCGGAGCAAGCCCGGTGCTCTTCCTACCTTCCTCCTTGTTGATCGCGGAGGTTGTGTATTTGCTAAGAAGGCATGGAATGCTCAAAATGCTGGTGCTTCTGCTGTTCTTGTTGTTGATGACACCAATGAGCCACTTATAACCATGGATTTGCCCCATGAGGATGATGAAGCTGCAAAATATATTGAGAATGTAACTATCCCCTCAGCCCTAATTGACAAGAAGTTTGGATTTGATTTAAAGAAAGCGGTTTCTAGTGGTGAGATGGTCAATGTAAACCTGGACTGGAGGGAAGCTGTTCCGCATCCAGATGAACGTGTAGAATATGAGCTGTGGACAAATAGCAATGATGAGTGTGGAGCTAAATGTGACATATTGATGGAATTTACAAAGGATTTTAAGGGTGCAGCTCAGTTACTTGAAAAAGGTGGTTTCAGTCAGTTTACTCCCCATTATATCACCTGGTATTGCCCTGATGCATTCCTTCTCAGCAAACAATGTAAGTCTCAGTGCATTAATCATGGGAGGTACTGTGCGCCTGATCCTGAGCAGGACTTTAGCACCGGATATGATGGAAAGGATGTGGTAATTGAAAATTTAAGACAGCTTTGCGTGTTTAGAGTTGCGAATGAAAGCAAGAGGCCTTGGATTTGGTGGGATTACGTAACTGATTTTCACATAAGATGCCCTATGAAGGAGAAGAAATACAATAAAAAATGTGCTGATTCTGTCATTAAATCCTTAGGACTGGATTCTGGTAAGATTGAAAAATGTATGGGAGATCCAGACAAAGATGCTGATAATCCTATCTTGAAAGAAGAACAAGATGCCCAGATTGGTAAAGGCTCCAGAGGAGATGTTACTATACTGCCCACACTTGTTGTCAATAATCGTCAGTATAGGGGGAAGTTGGAGAAGAAAGCTGTGCTAAAAGCTGTTTGTTCTGGCTTTGAAGAAACCACTGAGCCTGTTGCTTGTCTTAGTGATGAGATTCAAACAAACGAGTGCCTTGATAATAATGGGGGCTGTTGGCAAGATAAAGCTTCCAATATTACTGCATGCAAGGACACATTTCGTGGTAGAGTTTGTGAGTGTCCTTTGTTTAATGGTGTGCAGTTTAAGGGAGATGGTTACAGCCATTGTGAAGCAATTGGTCCTGGAAGATGCAGGATAAATAATGGGGGTTGCTGGCAGGAAACTCGTAATGGGAATACCTTCTCTGCTTGCCAGGAATCTGAAGATCTCAAATGTCAATGCCCCCCTGGTTTTGTAGGAGATGGTATCAAGACTTGTGAAGATATTGATGAGTGCAAGGAGAAAAAAGCATGCCAGTGTTCAGAATGCAGTTGCAAAAACTCATGGGGCAGCTATGAGTGCACATGCAGCGGAGATCTTCTGTACATAAAGGAGCATGATACATGCATAAGTAAGATGGCTAGTGAAGCCAAGGCAACGTGGACTGCTCTGTGGATTATTGTGGTAGTCTTAGCTGTGGTTGCAAGTGGAGCGTATATGGTATATAAATATAGACTGCGGTCATACATGGACTCAGAGATCAGAGCTATTATGGCGCAGTACATGCCACTTGACAGTCAAAATGACGTGCCCAGCCATTCTCATGAAGAGAATCACATCTGATATTCTCAACAAGTTGCACTACTTTTTCTTTTTGTTGTTCACCTTTCGTTATATTTTCTTTGAGAGCATTTGCTCTCAAAACCAGTGATCTGATAAGCAGCAGCAGCAGCAGCGGAAGATACGGAGAATTTCTACATAAATGAGAGAAGAATAATGTTAAAAAAAAATGTGAAAATGCATTCCTCCTATCTGTTTTATTACATCAAATTATTCGGCATGTTCTGTATAGAGTGCTTGTAGCATTTTAATGCCTACTTCTGGACAATGTTTTATCACCGTTGGCTTGATTTTTTTTCTGGATTATTTTAGATTTTTGTAGGTCTGTTGTAGTTATTGCTCAAATAGATATTCAAATTTGTTTTTGAATGATTTTATGTTTGGTGTTTCGGTTTAGTGAATGAAATATTTTATTACTTGGGCCAATTTTAAATTATTGTTATTATTCTACTTGTATACATTGATGCCTGTGATAATCATCACTAATTGTCGAAGTCGAGCATGTATATCCCAATCAAGATCTCTTGGGTCGTGAGATAA

Network for GWHGAAEX012187

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02225.21	PA	65	163	2.10E-11
PF12662.6	cEGF	500	520	2.40E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	128.590
SRP064423	SRR2545915	Juvenile tuber	156.150
SRP108465	SRR5643513	five period of Gastrodia elata	106.800
	SRR5643514	five period of Gastrodia elata	86.950
	SRR5643515	five period of Gastrodia elata	101.360
	SRR5643524	five period of Gastrodia elata	93.220
	SRR5643525	five period of Gastrodia elata	97.740
	SRR5643528	five period of Gastrodia elata	82.060
	SRR5643658	five period of Gastrodia elata	112.450
	SRR5643659	five period of Gastrodia elata	137.750
	SRR5643660	five period of Gastrodia elata	135.120
	SRR5643661	five period of Gastrodia elata	132.150
	SRR5643662	five period of Gastrodia elata	116.170
	SRR5643663	five period of Gastrodia elata	142.080
	SRR5643664	five period of Gastrodia elata	114.560
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	102.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	110.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	104.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	111.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	94.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	96.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	102.340
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	103.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	93.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	88.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	90.740
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	90.740
SRP279888	Gastro	Gastrodia elata tuber	118.98
	Juven	Juvenile tuber	126.75
	Mother_Gastro	Mother tuber of Gastrodia elata	68.51
	Mother_Juven	Mother tuber of Juvenile	89.86