Detail information of GWHGAAEX012197/evm.TU.scaffold_41.97


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG13434.00E-22Histone deacetylase complex, catalytic component HDA1
nrgi|743847531|ref|XP_010939126.1|7.20E-63PREDICTED: histone deacetylase 6 isoform X1 [Elaeis guineensis]
trEMBLtr|D7SXS2|D7SXS2_VITVI4.00E-60Putative uncharacterized protein {ECO:0000313|EMBL:CBI22472.3}
TAIRHS131288644.00E-22Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004050963965117105+
Transcript Sequence

Network for GWHGAAEX012197

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02148.18zf-UBP511097.20E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms68.060
SRR2545915Juvenile tuber58.070
SRP108465SRR5643513five period of Gastrodia elata35.560
SRR5643514five period of Gastrodia elata35.850
SRR5643515five period of Gastrodia elata33.750
SRR5643524five period of Gastrodia elata36.300
SRR5643525five period of Gastrodia elata29.040
SRR5643528five period of Gastrodia elata27.510
SRR5643658five period of Gastrodia elata31.950
SRR5643659five period of Gastrodia elata26.110
SRR5643660five period of Gastrodia elata25.050
SRR5643661five period of Gastrodia elata25.560
SRR5643662five period of Gastrodia elata29.910
SRR5643663five period of Gastrodia elata18.250
SRR5643664five period of Gastrodia elata26.210
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.030
SRR6049655Rhizomagastrodiae_C368-T10_good_126.360
SRR6049656Rhizomagastrodiae_C368-T07_good_120.700
SRR6049657Rhizomagastrodiae_C368-T07_good_119.500
SRR6049658Rhizomagastrodiae_C368-T04_good_116.590
SRR6049659Rhizomagastrodiae_C368-T04_good_117.500
SRR6049660Rhizomagastrodiae_C368-T01_good_115.670
SRR6049661Rhizomagastrodiae_C368-T04_good_114.400
SRR6049662Rhizomagastrodiae_C368-T01_good_120.340
SRR6049663Rhizomagastrodiae_C368-T01_good_116.800
SRR6049664Rhizomagastrodiae_C368-T10_good_129.620
SRR6049665Rhizomagastrodiae_C368-T10_good_129.620
SRP279888GastroGastrodia elata tuber 27.18
JuvenJuvenile tuber29.64
Mother_GastroMother tuber of Gastrodia elata 25.92
Mother_JuvenMother tuber of Juvenile 23.40