Gene detail

Detail information of GWHGAAEX012202/evm.TU.scaffold_41.101

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|300311327\|ref\|YP_003775419.1\|	6.00E-146	UDP-glucose 4-epimerase [Herbaspirillum seropedicae SmR1]
KOG	KOG1371	0	UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase
nr	gi\|590679306\|ref\|XP_007040543.1\|	0	UDP-D-glucose/UDP-D-galactose 4-epimerase 5 isoform 1 [Theobroma cacao]
Swissprot	tr\|O65781\|GALE2_CYATE	0	UDP-glucose 4-epimerase GEPI48
trEMBL	tr\|A0A061GDC4\|A0A061GDC4_THECC	0	UDP-D-glucose/UDP-D-galactose 4-epimerase 5 isoform 1 {ECO:0000313\|EMBL:EOY25044.1}
TAIR	AT4G10960	0	UDP-D-glucose/UDP-D-galactose 4-epimerase 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000040	5236803	5265730	-

Transcript Sequence
>GWHTAAEX012202 ATTCCTTCTAATCGCCTCCCCCGATTCGTCCTTTTCCGTCCCGCAGATATCTCTTCTCTGTTCATGGCGGAAAAGACCATTTTGGTGACGGGAGGGGCGGGATATATTGGAAGCCACACGGTTTTGCAGCTCCTCCATGAGGGGTTCCGCGTTGTGGTCATCGACAACCTCTGCAATTCTTCCGAAATCGCCATTAAGAGGGTTATGGAGCTTGCCGGTGACGCTGGCAAGAATCTCGCGTTTGAACAGGTTGATGTTCGAGATAGAGAAGCTTTGAACCTTGTGTTTGCTTCTACAAAATTCAATGCTGTTATCCATTTTGCCGGGCTGAAGGCTGTGGGAGAAAGTGTTCAAAAACCTATGCTTTATTATAACAACAATCTTATTGGTACAATAACTCTCTTCGAAGTGATGGCTGCTCATGGCTGCAAAAATCTCATTTTTTCTTCATCAGCAACTGTTTATGGATGGCCAAAGAAAGTTCCCTGTACAGAAGAGTTCCCTCTTATTGCAGCAAATGTTTATGGACGAACTAAGCTTATCATTGAAGATATGTGCCGTGACATACAAAAATCAGATTCTGATTGGAAGATAATAATGCTTAGATATTTCAATCCTGTTGGCGCTCATCCCAGCGGGCACATTGGTGAAAATCCTCGTGGAATACCCAACAACCTCATGCCTTTTGTACAACAAGTTGCCGTTGGGAGGAGGGCAGCGCTCACTGTTTATGGAACTGATTATAATACCAAAGATGGAACCGGGGTACGGGATTATATTCATATTATGGATTTAGCTGATGGACATTTTGCAGCTCTTGAGAAACTCTTCCAAGATGAAAGTATTGGCTGTGAAGTCTACAACTTGGGAACTGGAATGGGAACGTCTGTACTGGAAATAGTGGCAGCATTTGAGAAGGCATCTGGAAAGAAAATCCCTATGATCATGTCTGATAGGCGACCGGGCGATGCTGAGATTCTCTACGCATCCACCGAAAAGGCCGAGTTGGAATTGAATTGGAGGGCCAAGTATGGGATTGATGAGATGTGCAGTGATCAATGGAATTGGGCTAGCAAAAATCCTTGGGGATATGAACCCCCTGAATCCGAGAGCTAACATTGTTCTATTTTAGTGCTCTTATGAATGCTAATCTCTGAAATTAGTGTAAAGGACGGGTGAGGGGATCTCACACATACCGCTCAAATCTGAGCATGTGTTAAGTGACAAAAGGCTCCTCGATTCTTATGTAAAGCTTTTTACAGCTCGTTGAGAATTCATTAAATTGGGCATTTGACTTTATAGAAAACTCCTGATTCATAATATTATTTTTCTTAAGGGAAGCAGCATGAATAAAAAAGTGTTAATTTCTGTGGCATAATAATTGCTTATGTGGCATTGCCAATTCTAGGTTGTCATCATTTGGATATAACAACCAACTAGTTGTCATCATTTCGATATGACAAATGTGATATCACCTATCTTTGATTTATACCTTTGTAGTACAATTATTTGCAACTAAATTTTTTGTTCTGCAATATTGTTGGTCTTG

Network for GWHGAAEX012202

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.4	GDP_Man_Dehyd	7	331	1.40E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01784	galE, GALE	Metabolic pathways	map01100
		Galactose metabolism	map00052
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006012	Biological Process	galactose metabolic process
GO:0003978	Molecular Function	UDP-glucose 4-epimerase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.030
SRP064423	SRR2545915	Juvenile tuber	2.520
SRP108465	SRR5643513	five period of Gastrodia elata	7.020
	SRR5643514	five period of Gastrodia elata	4.220
	SRR5643515	five period of Gastrodia elata	11.170
	SRR5643524	five period of Gastrodia elata	6.300
	SRR5643525	five period of Gastrodia elata	29.290
	SRR5643528	five period of Gastrodia elata	36.270
	SRR5643658	five period of Gastrodia elata	24.100
	SRR5643659	five period of Gastrodia elata	5.530
	SRR5643660	five period of Gastrodia elata	5.920
	SRR5643661	five period of Gastrodia elata	3.780
	SRR5643662	five period of Gastrodia elata	9.910
	SRR5643663	five period of Gastrodia elata	6.080
	SRR5643664	five period of Gastrodia elata	3.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.950
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.740
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.340
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.600
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.590
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.620
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.620
SRP279888	Gastro	Gastrodia elata tuber	8.50
	Juven	Juvenile tuber	7.21
	Mother_Gastro	Mother tuber of Gastrodia elata	48.24
	Mother_Juven	Mother tuber of Juvenile	51.53