Detail information of GWHGAAEX012206/evm.TU.scaffold_41.110
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|344202164|ref|YP_004787307.1| | 3.00E-20 | hypothetical protein [Muricauda ruestringensis DSM 13258] |
| KOG | KOG0619 | 2.00E-90 | FOG: Leucine rich repeat |
| nr | gi|695014068|ref|XP_009393842.1| | 6.59E-117 | PREDICTED: somatic embryogenesis receptor kinase 2-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q94AG2|SERK1_ARATH | 8.00E-68 | Somatic embryogenesis receptor kinase 1 (Precursor) |
| trEMBL | tr|M0SFV0|M0SFV0_MUSAM | 2.00E-117 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P18840_001} |
| TAIR | AT5G21090 | 2.00E-90 | Leucine-rich repeat (LRR) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000040 | 5749068 | 5768680 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012206
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 25 | 64 | 5.50E-10 |
| PF00560.32 | LRR_1 | 92 | 114 | 1.3 |
| PF13855.5 | LRR_8 | 125 | 175 | 1.80E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 36.770 |
| SRR2545915 | Juvenile tuber | 36.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 43.740 |
| SRR5643514 | five period of Gastrodia elata | 41.080 | |
| SRR5643515 | five period of Gastrodia elata | 51.010 | |
| SRR5643524 | five period of Gastrodia elata | 47.020 | |
| SRR5643525 | five period of Gastrodia elata | 104.070 | |
| SRR5643528 | five period of Gastrodia elata | 85.410 | |
| SRR5643658 | five period of Gastrodia elata | 76.500 | |
| SRR5643659 | five period of Gastrodia elata | 21.910 | |
| SRR5643660 | five period of Gastrodia elata | 14.850 | |
| SRR5643661 | five period of Gastrodia elata | 23.830 | |
| SRR5643662 | five period of Gastrodia elata | 17.370 | |
| SRR5643663 | five period of Gastrodia elata | 22.630 | |
| SRR5643664 | five period of Gastrodia elata | 15.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 33.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 46.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 46.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.04 |
| Juven | Juvenile tuber | 7.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 38.68 | |
| Mother_Juven | Mother tuber of Juvenile | 11.61 |