Gene detail

Detail information of GWHGAAEX012207/evm.TU.scaffold_41.112

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672127361\|ref\|XP_008787144.1\|	1.28E-121	PREDICTED: uncharacterized protein LOC103705267 [Phoenix dactylifera]
Swissprot	tr\|Q946Y7\|SYP61_ARATH	2.00E-06	Syntaxin-61
trEMBL	tr\|M0SMV6\|M0SMV6_MUSAM	5.00E-110	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P10890_001}
TAIR	AT1G27700	1.00E-40	Syntaxin/t-SNARE family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000040	5829723	5835099	+

Transcript Sequence
>GWHTAAEX012207 TTCTGACGGCGACGGTCCACTGACGTTATGATACAACCACCATTTATTTAGATATATTATAAATGAAAAAAAGATATATACATTGAGAGAGAAGGGTTTCGTAAAAGAAGAAAGGGTTTCATCGCTCGAGCCTCTGATCTTATAACCGACAATCCTTGGATTTCAGATCATAGGCTCTTGATTTCTCACCTTTTTTCGAAACTCCCATGGCCACGGCGTTCGATCGATGGGAAAAGGATCCCTTCTTCTACGCTGCAGAAGAAGTGCAGGAATCCACCGACAGGATGGAATCTGTGTACCGTCGTTGGATGCTCGAAAAGGATGCTTCGATATCGGTTAGTGGAGACGACGGTGCCATCGCTACTGAGCTTCGGCGGGAACTTTATACTTCCCTAGGCACCGCTAAATGGCAGCTGGAGGAGTTGGAAAAAGCGGTCAGATACAGCGATCATGCTTCTGCAGTCGGCGAAGCCACCGTAACTCGACACAGCGATTTTGTTGCTGCAATTTCGAATAAGATTTGGATGGTGGAGAAAGCCCTAAAGGAGTCGAACCTAAAGGATGAGGGGGAGAGTGGTTTGTCTTGGGTACGGCTTGACGAAGTGGAAAGGGATGAACTCGCTCTCTTCCTATCAGGTTCAAATGCCGAAGGAGGAAATGTACTGCCTACACTTTCAGTTGTTGTCCCTGAGCCTGGAAATAGGATGAATGGGGAAGCTTCTGTTTGCTCGAAAACATCATGCCATACCGATGAGTTGCATTCATCGGATTTGTTGGAGAATAAAATAAAAGATCATCGTAGGGTAGCCAGTGCTTGTGCTGACTTGGGAGAATGGAAAATTTCAATTTCTGCTGGGGAGTCTTCTCAGAAGTTATCCAATGAGCAGCCAAATCTTCCCCCTCCAGCGATTCTCAGTTTCTCAAAGCCCAAAAACATGGAATCGGCTTCTAAGCCTAAGTGGTATAGAAATGGTTTTAGGAAGTGGAAGGCTGCGAGTCATGAAGATTTGGAAGAGTCTTTACCGTTGAGGAATCATCATTTCAGTAGGGGTATGAATGCTTGCTATGAGAAGAGTAAAAGCTGTCTCAGTGATTTCACTGATGATTCTTCCAATAAACAACTCTATGGTTGGCTTGGGGCTTTTCAACGACAGATTCAAAGGTCTCAGTATCAAATACAGTATGGAAGACCTGTTCAGATGATTATTTGGACTGCTGTCACCGTATTATTGGTTGGTGCAGGTTTTTGTTGCATCCATCAAACAAGCTGAGCTGCCAGGTTGAAGTCATTTGCTCCATGAGACTCTGAAAGTGGTTGCCCCGTCATCTCTGCATTAGTGCTGTTACGCAGCACTTCTCACAAAGTGGCGGGGGCAGAAGTATTATCATTTGAGCTGCTCATTCGTGGCTTGTGAGTGTGCATACTTTTATCTTTTTAACATAATTGTTTCATCTTTTCAAATGTTTATCGCCTTGCTTTTATTGTGGAGGGGTTATCAATGGGGAGATTGCTTAAAATCCTGTTTGATTTTTTAATTCATGTCTGAGTGGTATTTTTTTTGTTGCAACGAGTAATTTTCGGTCAATCAGAATTTATAAATATAATTGTCTTCTGATCTGTAAATAGCAGAATCTATATGAAACTGCTTTTGCAATTTATCTGTTGAACTGTTGCGGCAAGCAGTCGATGCTATATTTATACATATGTCGATAGCATTATAATTTTTTTATTATTGAATTACAATTAAGTTTTAGCTCTATTTGAATTTTTAAATCATGTTCAACTTTAATAATCAACTTTCTGCAAACTATGTCTTACTAAATTGCTTATTTAATCTTTTTTATTTGTAGATTTGGCTTTTTATTTAATTTCAATTGACAGCCCCACTAATTAGTATATGCAAAAGTATGCTGTTTAGTAAATTGAAATTGTTATAAACTTAATGATTAATTAATGACATGAATGATGCTTTTTGGATATATGAGAAAATTGGTACACTAAAACAAAGCATCTATTAAATAATTAAATTGTTATTAGTTGGGTAATTCCGGTTCACAACTGTAAATTTTATTGAATAATAATTTGAAAGCTTGAATTTTAGTTCAATTTGATTATTATTATTATTTTTTATGGATAGCCAGCTCAAGTAAAATATTAATGACAAGACCTGATTAATTTAATAAAATTAATATTACAGTTTGTTCTTTTTGCTAATAACATACGTCTCTTAGTTAATCTCAATGGAAACTACTCTACAGTCAGCTGGCTTTACAATTGGATTGCTTTTGCCCGAAAGAGGCTTTGGGAAAGCACTTGAGAATTATATGTGGTGCCAACTTGCTAGCTAAATAATTTGTAACAACTGATCTACCTAAGCTCATAATCATGCAAACAGTTGGCTTTTTGTCTTCTCTCATTAAGACTATCATTATATGGTGCACCGCATAATAATGATAAGTCAAAAATTCATTACATTGATTTTTCTGAAATATGCGACACCTTTTGGAAAAAAGGACCAGTCATTCATGATACAACCCCACAGGCAAAAAGAAACTCACAATGAAAATTTGTTAATATTTGATTGTTCTAACAAACACAAATTCAAATCATGTTTACCATAGCATATTGGATACAAAATGAAACCATATAATCACTGTAGCTTAATCAAACTCTTGAGCAATCTATACCAACACAGCATGCAACTCTATTGAAAAAAGGAACTACAAGGACAGGAAAAAGGCTAGGGCCTTCTGTAAAATTGTAGGAGCAAGTGATGCTGCCTTCTTTCTCATGCCGCTCTTCGCATCAATGTTGCTCTTGATCAATGGCATTAGACACCAGATTCGCAAGAGTATTGTCCAAGTTGCGTGATTAGGGAAGTAGGAGGTAGTCCAATAATGCTCAATGAAATTGGGGTTCTTCATGAAATACGTCGTAGCCTAAGTATATATATATAT

Network for GWHGAAEX012207

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09177.10	Syntaxin-6_N	11	105	4.10E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0048193	Biological Process	Golgi vesicle transport
GO:0016192	Biological Process	vesicle-mediated transport
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.250
SRP064423	SRR2545915	Juvenile tuber	49.360
SRP108465	SRR5643513	five period of Gastrodia elata	18.680
	SRR5643514	five period of Gastrodia elata	20.560
	SRR5643515	five period of Gastrodia elata	32.490
	SRR5643524	five period of Gastrodia elata	18.850
	SRR5643525	five period of Gastrodia elata	54.800
	SRR5643528	five period of Gastrodia elata	50.370
	SRR5643658	five period of Gastrodia elata	60.870
	SRR5643659	five period of Gastrodia elata	42.340
	SRR5643660	five period of Gastrodia elata	23.820
	SRR5643661	five period of Gastrodia elata	34.150
	SRR5643662	five period of Gastrodia elata	40.090
	SRR5643663	five period of Gastrodia elata	37.460
	SRR5643664	five period of Gastrodia elata	52.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	29.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	46.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.320
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	46.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	48.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	55.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	43.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.750
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.120
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.120
SRP279888	Gastro	Gastrodia elata tuber	34.61
	Juven	Juvenile tuber	20.89
	Mother_Gastro	Mother tuber of Gastrodia elata	38.43
	Mother_Juven	Mother tuber of Juvenile	38.11