Gene detail

Detail information of GWHGAAEX012213/evm.TU.scaffold_42.1

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0778	7.00E-07	Protease, Ulp1 family
nr	gi\|672114637\|ref\|XP_008777880.1\|	3.69E-24	PREDICTED: uncharacterized protein LOC103697734 [Phoenix dactylifera]
Swissprot	tr\|O65278\|ULP1B_ARATH	6.00E-10	Putative ubiquitin-like-specific protease 1B
trEMBL	tr\|A0A061EIH5\|A0A061EIH5_THECC	6.00E-17	Aminotransferase-like isoform 1 {ECO:0000313\|EMBL:EOY04468.1}
TAIR	AT4G00690	7.00E-07	UB-like protease 1B

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	26226	81656	+

Transcript Sequence
>GWHTAAEX012213 CCGGTTCAAGCTTCTTCGTCCCGCCGATCTTTCCTCTCCTACGCCATCAAGGAATGTTAATGCTGTTACCTCAAAAAGGGTCATGGCTCGCAAAAGATTTGCAACACCTATGGCTCGGCGAAGGAAGAGTGTTATGAATGACATTTCCAATGGGAAAACAGATGATAAAGTAGAAGCTGTGCTGCAGGATAAGGAACAGTTACTTTTAGAATGTCGATGTTATCTGTCAAGTTTTGCAAAAAGAGTACGACAATGGAAAATGAATGATCGTGAATGGGCTTTGTTAAGAAAAACTCCATTTGGAGAGCTTATTAAGGACATTCTGGGGCTTGATGTGAATATGGAAATAGTTGATGCTCTGTTAGGCTTTTGGGATGAGGAGCATTGTGGGTTTATTGCCGGTGGGATAATTATACCTTTCACAGTGGATGACATTGCTCTGATTACTGGTCTTCCTAACCGGGGTCAAAAAGTAATGAGAGAATATGTAGGTTCCAAGTATCCTGAATTTAATAGGATATTTTTGAACTTAAAGAATATAGAGAGAAGGCTGAATTTTTTCTTCAGTAACAGAAAAGATCCAAATCCTGAGACTGACAAAAATTTTGTTCAGCAAATGATTCTATACTTATGGGGATCTGTGTTGTTTCCTTCTAGTTCTAGAATTGTACCAAAATACATGACTAAATATGTTAAGAATCTTGATGCAATTGGAACTTTTAATTGGGCCGAAGCACTCCATTCATTCCTTGTAAAAGAGATCAATGCAAAGGCCATGATTGTGAAGGAGCGAAATGAAGGGAAGAGGGCTGTTGTGGGATACATGAACGGTCTATGCTTTATAATATGTGCATGGTTTTTTGAGCATGTTGATTTTGGTGAAGATTCACGGCCTTTTAATCCAGAAGTAAGGCCGAGAATGCTGAAGTGGGTGAAAGGATGTAAATTTTGGCAGAGAATACCTTTTCTTCAAAGATTTAGAGAGATAATGGTGGACAAGGTTTCCTACTGCCTTCTCCCTAAAAAGGATGAGTTTGAACTTATATCCCTGCCAAGTATGAAACGCATGCACTCTCAGAATGGTTGTTCGGATGATGCAATGTGGGGTAATGCATCTCTGGCTGAAAACTTGAAAGTGTTGGGACCTGAAGGTAGACCTGGTTATGATGGAAATGAACAGCAAGGTAGGGAGCTGAAAAAAAAAAAACAAGAAACGAAAGTGGAAAATCTTGAGTCTTCAGAGATATGGTGTCTCATTGAGGAAATTTCTATTTTGGAAATGAAGGTTGTAAAACTAGGAACATTAGTTGCATCGAATGGATGGGAAATAGAGGGGATTGTTGATAAGATGAATGGAAAGGCTGACAAACAAGTTAGCTATGATCTTACTGAAATGTTTCACAAGTCATGCATTGAAGGAGAGAATGGCCAATCAGTTGGAGTGGTTGGCCATCCAATCTTCAGTAGCATTGCAAGGGATAAAATGCAAGCATGCCAGCAACATGAGGAAAAGAAGATCTTGAAGTCAACCATTGCAAAGGAGCGTCTCATGCTCAAGAGAAGAAGGGATATTACTAAAGAGCAAGCATCTATTTCCAGCATTGAAAATTTGGAAAGATTTAAGAGGAAGGGCAATAATGTGCTGGTTAATCTTGATGACTATGCATGCCCGACTGAGCAGAAAAAGGAGGCAAATGTTGTGCCGCTGAATTATGTTGGCCGTGAACTTTTGAAAAAGAATGTGAGAAAATATCTTGATGCATTTTGCATAAAACCTATGCAGAAAGATGACATAGTGTTCTTTGATTGGAATATTTCTATTCGAAGACATTCAATGGTTGAGTACCTCCAAGGTGGCTACACTGGTGAAGAGATTATAGATGCATATGCTCGTATATTATCTGAAGGGATTAAGATGACTGGAAACAATTTTACAAGTTTTTTATATGTGCCACCTATGTTTTTGGGACTTTATCGCAACAAGCTTGGTAGCTATAAAACTTTTTTGAATGATGTTGACAGGAAGTCCCTGGAGAAAGCCAATTTATTAATTTTACCTTGTCATATCTCAAGTGCCAACCATTGGTTACTCCTTGTATGTGACATGAAGATGCATAAATGGATTGGTTTCGACTCATTGTATGATCCAAGGCACAGGGAAGCTGCAAAAGCGCAGATTATGCTTTTAACCGACTATCTCTATCAAGATCATGCGTTGGATATTACATCTTGGGGTTTCGAATACAGGAGGATTTATCCTCAGCAAGAACCTGGCACGCTTGACTGTGGAGTCTTTGTCATGAAGTTCATTGAAAGTATTATACAAGTTCCCAGGGAAATTAACTTTAGAGGAACCGATATGCAGTTATTTCGACCTCAAATTGCTTACCAGATCCTTCTTCATTGGCAACGTTGATGTAGATTCTAATATATAAAGCTTCGATCAAGGTCCACTGAGGTAACTGACTTCTATATCATACATACTTGAATTTGAAATTCAATAGTAAGGCTTTGCCAAGCTATGGGTGTGTGCGAATGAGTTCACATTTATAGCGCTGACTTGGGTAAAACACTTTATAACATGGCTTGTCCAGTCAGCATCACTGACGCTTGTGCTGATCGAACTCCCTACCAAATTATACTAAGTTACGCTCGTAATCTCGCACAATTAAAAATCCCACCATTTAATTTAGCCAAAAAAAATCAGTTGACTATGTTGATCCTAACACATTAGACCAATTTTCATATTAAATCAG

Network for GWHGAAEX012213

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02902.18	Peptidase_C48	667	797	9.00E-14

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	pathway	mapID
K03345	SENP2, AXAM2	RNA transport	map03013
K03345	SENP2, AXAM2	Wnt signaling pathway	map04310

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0008234	Molecular Function	cysteine-type peptidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.730
SRP064423	SRR2545915	Juvenile tuber	23.130
SRP108465	SRR5643513	five period of Gastrodia elata	27.280
	SRR5643514	five period of Gastrodia elata	25.230
	SRR5643515	five period of Gastrodia elata	24.610
	SRR5643524	five period of Gastrodia elata	26.270
	SRR5643525	five period of Gastrodia elata	29.390
	SRR5643528	five period of Gastrodia elata	27.570
	SRR5643658	five period of Gastrodia elata	31.740
	SRR5643659	five period of Gastrodia elata	22.330
	SRR5643660	five period of Gastrodia elata	22.350
	SRR5643661	five period of Gastrodia elata	19.730
	SRR5643662	five period of Gastrodia elata	22.540
	SRR5643663	five period of Gastrodia elata	22.470
	SRR5643664	five period of Gastrodia elata	19.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.630
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.880
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.800
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.620
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.540
SRP279888	Gastro	Gastrodia elata tuber	33.39
	Juven	Juvenile tuber	32.18
	Mother_Gastro	Mother tuber of Gastrodia elata	35.76
	Mother_Juven	Mother tuber of Juvenile	35.01