Gene detail

Detail information of GWHGAAEX012215/evm.TU.scaffold_42.4

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|338732401\|ref\|YP_004670874.1\|	ADP,ATP carrier protein 1 [Simkania negevensis Z]
nr	gi\|695004264\|ref\|XP_009388534.1\|	PREDICTED: plastidic ATP/ADP-transporter-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|O24381\|TLC1_SOLTU	Plastidic ATP/ADP-transporter
trEMBL	tr\|K3YQU7\|K3YQU7_SETIT	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si016641m}
TAIR	AT1G80300	nucleotide transporter 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	258733	268646	+

Transcript Sequence
>GWHTAAEX012215 CAACCGTTCATTTAATGACTGCAGTCACATTGCTCGACCAAAATGTGCACTTTCCCACCCTACTTCGCCTGTGCTTGTCCCAACATCTTCTATTGCATCCTTGTTTTGTTCAAGAGCTGAAAATTGCAAACCAAACCCTTTGGGAGAGAAGGCATGGAAGGGCTTGTGCAGAACAGGGGCCTTCTCTCTCTACCATCCAACCCCCAGGCTCGAGCCTTTCACCATCCCCTCCGTTCCCTCGGTCCTCGCCTCTACCGGCGAAGCTTGTTCCCTGCCTCCGCTCTCCCGCAGGCCCTAACATTAACAGCTCAAAAACCCGTCCGAGTGCTGAATGGATTCAGTCCCAGTGCTCAGAACTTGCAGAATTTGGGGGAAACCAGTGTTTTTTGCGACGGAACTCCGAGAGCTCGAGATGGGTTTCGGAAGAGAGGGGTTACCCCCAGCGGAGCTGCAATTTCAGTGGACGGAGCCGGATTCACGAATCCCACTTCAAGCAAGCCAAACCCCAAGTTTTTGGGAGTTGAGATCACGACTCTGAGGAAGATCATACCCCTCGGTCTAATGTTCTTCTGCATCCTTTTCAATTATACCATTTTGAGGGACACCAAGGATGTGCTGGTGGTGACGGCAAAGGGGAGCAGCGCTGAGATTATTCCATTTCTAAAGACATGGGTTAACCTGCCTATGGCGGTGGGTTTCATGCTGCTGTACACCAAGTTGTCTAACGTTCTGTCAAAGGAGGCTCTTTTCTACACGGTTCTGTTCCCTTTTATTGCTTTCTTTGCAGCTTTTGCTTTCATCCTCTATCCGCTGAATAATGCTATCCATCCCACCGCACTTGCTGACAAGCTTTTGGCTGCCCTTGGGCCAAGCTTTCTTGGTCCGGTGGCTATCCTCAGGATTTGGAGTTTTTGTTTGTTCTATGTGATGGCTGAACTTTGGGGGAGCGTAGTCATATCAGTTCTTTTTTGGGGGTTTGCCAATCAGATTACTACTGTTGAGGAAGCCAAAGAGTTCTATCCTTTATTTGGTCTTGGAGCTAATATAGCCCTTATTTTCTCTGGACGAACTGTGAAGTACTTTTCCAACCTGAGGAAAGCATTGGGTCCTGGTGTTGATGGTTGGGCAGTATCTCTAAAAGGAATGATGAGCATTGTTGTTCTTTTAGGCTTTGTGATTTGTGGAATCTATTGGGGAGTGAATAAATTTGTTGTAAATGATCCCTCCATTCCTAGAACTGAGCGCAAAAAGAAGGAGAAGGCCAAGCTTGGTATGGGAGAGAGCTTGAAAGTTCTAATTTCTTCTAGATACCTAAGGGACCTTGCCACCTTGGTTGTAGCATATGGCATTAGCATCAATCTTGTTGAAGTAACGTGGAAATCAAAACTTAAAGCACAGTTCCCCAGCCCAAATGAGTACTCATCATTCATGGGCGATTTCTCTACTGCTACCGGCATTGCTACTTTTACAATGATGATTCTGGGAAGAGTGATACTGAGAAAATTTGGATGGGGTGTGGCAGCCATGATAACACCTACCGTTCTACTGGCTACCGGAGTTGGTTTCTTCTCTCTGATTTTGTTTGGTGAACCACTTGTCCCTTTGCTGGCACAAGTTGGCATGACTCCTCTCCTTGCAGCTGTTTATGTTGGCGCACTACAGAACATTTTCAGTAAAAGTGCAAAATACAGCTTATTTGATCCTTGCAAGGAAATGGCTTATATACCTTTGGATGAAGAGATGAAGGTTAAGGGGAAGGCAGCCATTGATGTTGTTTGCAATCCGTTAGGAAAATCAGGTGGTGCTTTAATTCAGCAGTTCATGATTTTATCATTTGGTTCTCTTGCTAGTTCAACTCCTTATCTTGGAGGAATACTGTTGGTAATTGTTCTGGCATGGTTGGGAGCTGCAAGCTCCCTGGATTCACAGTTTTCTCCATTAGCCAAACAAGAGCTAGAGAAAGACAGGGTGAAGGAAAAGCTGAAGGAGCCTGTGATTGATGTTCATGCAAAGCAAGTTGATAGTAGTATTCTTGGGAAGGAAGAAAATGGTTCTCTTCCGGCTGAATCTAAAGCATCCAATGGCCCAGTCTTGAAAATAAGTGCGTCAGAGCCGGAATCCTCGAGCCAACTTCATCAGTGAGCTTTCATTGGAAATTGTCAGTTCTAAATCCCCCCAAAATTCGTAGTACTGCTAAATTTCTTCAGCGAATGCTAGGAATGATTTTGATATGCTACTTGGAAGTGATCAATGAGCTTCAGTTATCAGATAGTGATAATGGTAGGAGGCATATTAGTAGCTTCTTTATCAATTTTTGAAGAGAAATAAACACTCCAGCTGCTCTTCTTTTTAATGTACGTCTAATGCTCAGATATTGAAAATCATTCATGGATATGTGATTTGTTTCTTATTAGATATTTTGGTAGAGGCTTACATGGAAGCTTACTTTTTCCTTTAGTTCTGTTTGGTTCGAGGCATAATAATTTCGGTGATAAAATGAATGCAGCATAAGGTTCTTCATATAAAGCTTCATACTTAGATTGCGTCAATATGGTTGGGTTCCATCTCAACACCTATGGATCCTATGGCTCAGATTGCTTGAATGGGGTTAAGAGAAAGGACGTGGGCATGAAGCTGAGCCCGGGACAAGAGATACACGCACAAAGCTGAGCACAAGCGGATTAGTTATATATAAGAACAAATCTATATTAAGGTGGATCAGTGGTTGCATATGATGAAAAATTAGTACATTTGTATAAAAAAGAAGAAAGAAATAGAAAGATGGTTTGTCATACTGCATGAGAAAGTCACCTGAACTAGGCCTTGCATACAAAAGCAGAACATACATACTACAAAATAACAAAAAAAAAACAGCTTTTTACAAGGGAACTACTAAACCATAAACCTCTCCATGTGAGTTTGAAGGGTGAAGTGAATAAAATTGTTGCTATAATGGCTGCAACAAAAATGAAAAACAAAATTGTTATTTAAAAAATGTATATATCGTAAAGCAGATTAAACAAAAATGTAAATTCCGGAAAAAATACAATAAATTTAATTTTTCTCTAAACTCTATGAACTAAATAGTAATATCAAGCAATATAAACACATCCTGACTCCTTTCAAATTTGCACAATTCCACACATCGCCTTTATTAATTTAAATATTAACCATAAAGCTCCATGCTTTATTTAAGGAGTTACATAGTAGCTTCACCTAATAAAATAAAAAATAATTAATATTCTCATTAAAGCTATTAA

Network for GWHGAAEX012215

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03219.13	TLC	115	593	2.00E-201

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006862	Biological Process	nucleotide transport
GO:0005471	Molecular Function	ATP:ADP antiporter activity
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	80.060
SRP064423	SRR2545915	Juvenile tuber	87.000
SRP108465	SRR5643513	five period of Gastrodia elata	80.190
	SRR5643514	five period of Gastrodia elata	59.090
	SRR5643515	five period of Gastrodia elata	57.490
	SRR5643524	five period of Gastrodia elata	45.180
	SRR5643525	five period of Gastrodia elata	19.670
	SRR5643528	five period of Gastrodia elata	18.580
	SRR5643658	five period of Gastrodia elata	14.370
	SRR5643659	five period of Gastrodia elata	126.160
	SRR5643660	five period of Gastrodia elata	98.940
	SRR5643661	five period of Gastrodia elata	116.490
	SRR5643662	five period of Gastrodia elata	151.390
	SRR5643663	five period of Gastrodia elata	132.880
	SRR5643664	five period of Gastrodia elata	106.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	140.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	126.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	155.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	89.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	89.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	73.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	71.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	124.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	148.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	82.070
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	125.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	125.540
SRP279888	Gastro	Gastrodia elata tuber	102.48
	Juven	Juvenile tuber	118.45
	Mother_Gastro	Mother tuber of Gastrodia elata	15.52
	Mother_Juven	Mother tuber of Juvenile	39.35