Gene detail

Detail information of GWHGAAEX012216/evm.TU.scaffold_42.5

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743798655\|ref\|XP_010925293.1\|	0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Elaeis guineensis]
Swissprot	tr\|Q9SSQ4\|FRS6_ARATH	3.00E-134	Protein FAR1-RELATED SEQUENCE 6
trEMBL	tr\|I1IBF2\|I1IBF2_BRADI	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI3G48330.2}
TAIR	AT1G52520	9.00E-134	FAR1-related sequence 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	271089	279858	-

Transcript Sequence
>GWHTAAEX012216 GGTAGCAGCACTCTTTTGAAATTTTTGTGTGCTGGGAAGAGTTTCGATCGATCGGAGATACAAATTTGGGCGGCACTCAGTTTTTTATTGAGATGAATTAGAGACTGAGATTTGGGGCTATTTGATAAATAGAATTTGCTAGTTCAAGTCCCTAGCCGACTCCCCTTCACATTTGACAGCAAAAAAAAAACCTCGCTCCTTTCCTCCGCGAATCCTGCGTTACTCTCTTCGTGCATCGCTCTCTTCTTCACGGAGGCACGCTGAGACGCCTTCTGCATCGTTTCTCCTCGCTCTCTCCGACAGTCCGACTCTGCCGTGACGCTGACGGCCGAGTCCTTCTCTTCTCCAAGGAGCAGGACTCAAGTAGTGGAATGAGTATTATCAAACATGATCAAATATTGGATAATAATTTAAATAATATCGAAGAAATGAAAGGTGGGAATCTGAGCTTAGTTGATAATGATGATAGTAAGGAGAAAATACAAGATTCTGAAGATGATAGAGTCCCTAGAGTGGGGATGATCTTCAAAACCTTTGAAGAGGTATATGATTTCTATAACCAGTATGCTCGCCGTGTTGGGTTTGGTACAAAGATAAGGAGGTCATGGTACAGTCTTGATGATGGGCAATGCAATAAGTTTATGCTCACTTGCTGCAAGGAGGGTAAGAGAGAGTACAAGAACACTGAACGCTGCAGCTCATATAGATTAAGATTAGCTGCTCGAACTGATTGCCAAGCTCGGATTAAAGTTTTCAAGAAGTATTCAGATGGAATGTTTCATTTAACGGAAGTTAATCTTGAACATAACCATTCTGTTAACCCATCAATGTCAAGATATTTTCGTTCTCATAAGGACTTAAATGATGGAGCAAAAAAGTTACCAGTTATGAGAGGCAAAGGACATAGGGATATATTATCAGGTGAGAATGAACAAGAGCATTCTTCTGCAAAAGCTCGGTCTTCTTTCCTTCGAAAAGATGATCTTGAATCTCTTTATCAATTTTTTGCTCACATGCAAACCACTGGCACAAACTTCTTTCATTTGATGGATTTTGATAAGGATGCTTACCTTAAGAATGTTTTTTGGGCTGACAGCAGGTGTAAGGCAGCATATCAGTATTTTGGTGATGTTGTGACATTTGATTCTACCTATCTTACGACAAACTATGAGACACCTTTGGTTTCATTTGTTGGGGTAAACCATCATGGTCACTTGGTGCTGTTTGGTTGTGGTTTGATTTTAGATAGATCTATTGAGTCTTATAGATGGTTGTTTAAATCATGGCTATTATGCATGTCAGGAAATTATCCTAATGCCATAATAACTGACAATTTTAAAGACATACAAGAAGCTGTTGCGGAGATCTTTCCATGTTCTCGTCATCGTTTTTGTTTATTAAACATAATGAAGCAAATGCAGGAACATTTGGGGGCGTACCCTGAATATAAAGCCATCAAGGGAATGATGAAAAAAACTGTACATGACTCATTAAGGGTTGATGATTTTGAAGATGGTTGGAGAGTTATGATAGAGAAATTCTCGCTTGAGGATAATGAATGGCTGAGGTCTCTGTATGAAAATAGGCATTCATGGGCACCTGTTTTTGTTAAGGAAACTTTTTGGGCAGGTATGTCAAGCACTCAACCCAAGGAAAACATAAATTATTTTTTTGATGGATGCATATATCCTAAAACATCTTTAAAGCAGTTCATTCTCAAGTATGAGCCAACTTTAAAAAGTATATTTGAAAAAGAGGTACAGGCAGATCGTGATTCTTTTCATAAAAACCCACAGCTAATATCAAAATTTTACATGGAAGATCAACTACGTAAGCTTTACACAGTGGATATGTTCAAAAAGTTCCAGGAAGAAGTCAAGGCCATATTGTATTGCATTCCTTCATTGGTTAGGGTTGATGGCCCAAAATCTATCTTTGAGGTCAAAGAACCCTTAAGAATGAAGGATGGGAATCAGATGGAGAACAAGAACTATGAGGTTACTTATACTTCTAACGAGTTGGAAGTCAGATGTATCTGTTGTTCGTTCCAGATGATTGGAATATTATGTAGGCATACATTGTCAGTTCTGAACTTTCTTGAGATTTATGAAATCCCAGCTGATTATATTGTTGAGCGTTGGCGAAAAGACTATAAAAATATTCATGTTCTTCCTTGTTTTTCAAATGATATTGTAGCTAGTGGGCCTGCGGAACGTTATGATAATTTGCACAGGCATTGTTTAAAATTTATTGAGTTTGGTGCAAGTTCTGATAGCCTTTATGAATATGCTCTTAAAATATTAAGTGAGGCAACAAATGAACTTTATGCAAGCGATCCAAGTGCCAGTGACATACAATCCAGATCCTTAATTTCTTTTAGTGATAAAAGAATTGTTGGGAATGAGGCTAATGAGATCTATGATCTTTCAGAATTGAGGCAGAGTAGTCAGCCACTTAAAAAGAGAAAAGAATTGGCTGATAAAACAGTAAAAAACAGCAAGAAGAAGGTTCCACCAAGAAAACCAGTAATTGCGTGCCAAAATGATGCTCTTCATATGGCTCCAGACACGCCACAATTTGATGCTCGCATGTGGACACATGACAGCATTAGCTTAGCAGAACAAGTCAGCCCTCCTAACTTATCAATTGGGAACCATTTTGGAGTACATATGAGCCAGCAGCACACTGTTGACAGTCAGGCAGGGATACGATGGAGTTTTCAGCACATGTTCCAACAACCGCACACGTCAGATGGACCTCCTGGTCAATGGTCTGTCTAGTAGCCTGCTTCTGTACCAGGCTTGGGAGCACTAGGAGCGACTCAGACCACCTGAGTAGAGAGCTCACTGGAGTTATCAGAAGGCGAGAACTTGGAGGTTGTTGTCACTTAATCATTTTATGTTCTTGTTTTAGTCTCTTTTATTTTGTTAAGGCAATGCAATATCAAACCTAATAGCTATGGATAGAAACTTTGTGATTTGAAAATGAGAATGTTGTTTGTTTGCTTTTATTTTGCTTAGATGCCTTAATACTATCCTGCGGATAATAACAATTGATATCAGACTTGTTGATTTGACATCGGTCGTTGCAAGTGCTTGTTATTTACTGATATTCTA

Network for GWHGAAEX012216

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03101.14	FAR1	60	150	1.20E-18
PF10551.8	MULE	254	347	2.10E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.730
SRP064423	SRR2545915	Juvenile tuber	28.840
SRP108465	SRR5643513	five period of Gastrodia elata	24.220
	SRR5643514	five period of Gastrodia elata	26.050
	SRR5643515	five period of Gastrodia elata	22.910
	SRR5643524	five period of Gastrodia elata	25.290
	SRR5643525	five period of Gastrodia elata	11.010
	SRR5643528	five period of Gastrodia elata	8.950
	SRR5643658	five period of Gastrodia elata	12.070
	SRR5643659	five period of Gastrodia elata	24.840
	SRR5643660	five period of Gastrodia elata	22.630
	SRR5643661	five period of Gastrodia elata	23.410
	SRR5643662	five period of Gastrodia elata	20.380
	SRR5643663	five period of Gastrodia elata	23.220
	SRR5643664	five period of Gastrodia elata	19.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.370
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.350
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.730
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.190
SRP279888	Gastro	Gastrodia elata tuber	29.55
	Juven	Juvenile tuber	32.14
	Mother_Gastro	Mother tuber of Gastrodia elata	22.51
	Mother_Juven	Mother tuber of Juvenile	25.38