Gene detail

Detail information of GWHGAAEX012218/evm.TU.scaffold_42.8

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|289596148\|ref\|YP_003482844.1\|	3.00E-07	TPR repeat-containing protein [Aciduliprofundum boonei T469]
KOG	KOG1156	0	N-terminal acetyltransferase
nr	gi\|670383485\|ref\|XP_008672544.1\|	0	PREDICTED: uncharacterized protein LOC100274696 isoform X1 [Zea mays]
trEMBL	tr\|C0PF85\|C0PF85_MAIZE	0	Uncharacterized protein {ECO:0000313\|EMBL:ACN33851.1, ECO:0000313\|EnsemblPlants:GRMZM2G047093_P01}
TAIR	AT1G80410	0	tetratricopeptide repeat (TPR)-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	291906	342447	-

Transcript Sequence
>GWHTAAEX012218 CGTAATTCTGTGAGAACCCAGGGGCATTTTTCTGGTGAGCTCATCTGCTTACTTGTTGGCCTCATAGGGTTAATGGATCCCTAAGTACTAGATAATTTAACAGGAGGAAGGCGCAGACTTTCCATTCTCTCATTGGTCGACACCCTTCGTATTGTAATCTTTTCTTCTCTCTGCTTAAAGCAACTCTGCCTTCTGTATCTCGATTCCTCCCTATTGTCCCTCCTAGGGTTCTCGTGTTTGCTTTCGGCGACAATGGGGTCTTCCCTGCCTCCGAAGGAGGCCAATCTGTTCAAAGTCATAGTTAAATCTTATGAAACTAAGCAATACAAAAAGGGAGTGAAAGCTGCAGATGCTATATTAAAAAAGTTTCCTGAGCATGGAGAAACCTTGTCTATGAAAGGATTGACATTGAATTGCTTGGATCGAAAATTTGAAGCTTATGAACTAGTTCGACGTGGATTAAAGAATGACCTGAAAAGCCATGTTTGCTGGCATGTTTATGGTTTGCTATATCGGTCAGATAGGGAGTACAGGGAGGCAATTAAGTGTTACAGAAATGCTTTGAGGATTGACCCAGACAACATTGAAATTTTAAGGGATCTTTCCCTTTTACAGGCTCAAATGCGTGATCTGACAGGATTTGTTGAAACCAGGCAGCAGCTTCTTGCACTGAAACCAAATCATCGTACAAACTGGATTGGTTTTGCTGTTGCCCATCATCTCAACTCCAATTGTTCAAAGGCAATTGATATTTTGGATGCCTACGAAGGGACATTGGAAGATGATTATCCTCCTGAAAATGAGCGTAGTGAACATGGTGAAATGCTTTTGTATAAGATATCTCTGCTGGAAGAATGTGGATTGCTTGACAGAGCACTTGATGAGATGCACAAGAAGGAGACAAAAATTGTAGACAAATTAGCATTCAAGGAACAATTGGTGTCTATTCTAGTGAAGCTTGGTCGAGTAGGGGAAGGGGAAAAATTATATAGGTCCCTTCTTTTTATGAATCCAGACAATTACAGGTATTTTGTTGGATTACAAAATTGTTTAGGGTTGTATTCTGAAAATGGTCAGTATACTACAGAGGAAGTTAATAAATTGGATGCCTTGTATATATCACTTGCTGAGCAATATAGCTGGTCATTTGCTGCTAAGAGAATTCCACTTGATTTCTTAGAAGGTGAAAAGTTTTATCATGCAGCTGAGAACTATGTTAGGCCTCTTCTCACGAAGGGAGTTCCTTCATTGTTCTCTGATCTTAATCCTTTGTATGATCATTGCGGAAAGGCAGATATCCTAGAGAAATTGTTTATTGAATTGGAGACTTCAGTAAAATCATCTGGATGTTATCCAGGAAGTGAAAAAAGGGAGCCACCTTCAACGCTTCTATGGATTTTATTTTTGCTCTCTCAGCATTTTGAAAGAAGGGGGCAGCATGATCTTGCTCTGGTTAAAGTTGATGAGGCCATCCAGCATACCCCAACTATGATAGACCTTTACTCCATTAAGGGAAAAATTTTAAAGCAAGCTGGTGATTTGGTAGCTGCATCTGCTTTAGCTGATGAAGCTAGATCCATGGATCTTGCTGACCGTTATTTAAATAGTGAATGTGTTTTGCGCATGCTAGAGGCAGATCAGGTTGGCCTAGCGGATAAGACGGCTGTTTTGTTTACAAAAGATGGAGATCAACACAACAATCTGCATGATATGCAGTGCATGTGGTATGAGCTTGCGTCTGGTGAAAGTTACTTTCGCCAAGGAGATCTTGGACGTGCCTTGAAAAAATTTCTTGCTGTTGAGAAACACTATGTGGACATGACTGAGGATCAATTTGACTTTCATTCTTACTGCTTGAGAAAAATGACATTGCGAGCTTATGTTTCAATGCTGAAATTTCAAGATCAGTTACATTCACACTCTTACTTTCATAGAGCAGCTGCAGGTGCTATAAGATCCTATATAAAACTTTTTGATTCTCCATTGAAACCAACCGATGAAGCTGATGGTGATGTATCTGGCATGCTCCCTACGCAGAAGAGGAAACTGAAACAAAAACAAAAGAAGGCTGAAGCCCGGGCTAAGAAAGAGGCTGAAGAAAAAAATGAAGAAACAAACACTGGTAGTTTGACTAAGACTGGAAAGAGGCAGCACGCTAAACCAATTGACTTGGATCCTCATGGGGAGAAACTGTTGCAGATTGAAGATCCACTTTCAGAAGCTACGAAATATTTGAAGCTCCTGCAGAACAACTCATCCCAATCATTGGAAACACATATACTGTCTTTTGAACTAAATATGCGAAAGCAAAAAAAGTTGCTTGCTTTCCAGGCCGTGAAACAATTGCTTAAGCTGGATGAGGATAGCCCTGATGCACACAGGTGCTTGATAAAATTCTTTCATAGAATTAGAAACTCGTCAGCTGCTGTCACAGATTCGGAGAAACTTGTATCGAAAGTTTTGGAGGCTGAAACGCTAAATTTGAGCCAGTTGCATGGAAAATCTCTGGTAGAAGTAAATAAGGGGTTTAAGGCACAAAGGTTCTTTGATGCATAGGGTTGCCGTTGTGGAAATGCTTTATGTTTTAGAGCCTGATAAGAAGCCTGAGTTTGTTCAATTAATTCAGGAGAGCCAAATAGTACAGCATCTGTAAATGGTTCTTTGAGCCCAGTTGGTGAGTGGAAACTTGATAGTTGAAGGAATTTCTCTGATCCCGATGCTGCACACTGTTGGAAGGGCCAGTGAGCTGTTCAACATATTTGGCATTTGAGAATCTCAACATCTAATGAGCAGCTGCTGGTCTCTGTTTCATCCAATTGTTGTGGCATGGAGTATTGCATTCATCGTTCAGAGCGAGCAGTGCTAAATAATGTTGTAGCTGCAGTAGTAATAGTAGGACTCATAGTTGAGGGGCTGCTTCTCTTCCCGTAAGCGTTCTTCGGGATTTTGGCTTGGGCATAATGTATTATAACTGCAGTTGCTGCTGCTTCTTTTTTCTTCACAGCCATTATGATATTTATTTTTTTCCAAAATGTGCATAATGAAGATTGATTGTTGACTTGCTAGTGTTGTTAGTGATTGATTTACTAATCCTGGTATAGTGAAGGGTATACTGGTATATCAGGAGGTTAATATATTGATTTTTATATTGAATCAACATTCTTAAACCATAAATTGAATGATTATAATAGTAAAGCCACTTAGTTTTATTATATGTAAAACTATGAGATCTATTTTACAAAATAGGTGATCATTATTTAGTTTATTGTATATATAATGGTAGTTATTTACGAATCTCTTTTAGTAATTATTTCAAAGTGCAATGTCTTCATTTTCAAATAGGAACAGTGTCATCTTTGATGTTATAAAATTCTTGGGATTTGAAACTCCAAATATGTTTGTGAAGCATTTTGCGACTGAAGATAGATGGCAGTATGGAAAGGCATTATAGAAGGCATTCAATTGTCATGATCCAAAAGATCGTAGAGTACTTAAAAGTTACACATACGAGACTTCCCGCCTCTCTCGGACGCATTGTCATGCTTTTATTTTTGAAAGTAGAGTTTTCAAGCTTGGGCTGTTCTTTATTCTAAATTTTTGAGTAGTATAGCTGTATAAAAATGATGTGTGCAAAGCTAGTCAGTCATTTGCTACAGACTGGATCA

Network for GWHGAAEX012218

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13414.5	TPR_11	84	123	3.60E-07
PF12569.7	NARP1	187	697	2.60E-190

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.150
SRP064423	SRR2545915	Juvenile tuber	25.510
SRP108465	SRR5643513	five period of Gastrodia elata	24.380
	SRR5643514	five period of Gastrodia elata	24.210
	SRR5643515	five period of Gastrodia elata	24.030
	SRR5643524	five period of Gastrodia elata	25.260
	SRR5643525	five period of Gastrodia elata	20.970
	SRR5643528	five period of Gastrodia elata	23.130
	SRR5643658	five period of Gastrodia elata	21.080
	SRR5643659	five period of Gastrodia elata	29.760
	SRR5643660	five period of Gastrodia elata	33.360
	SRR5643661	five period of Gastrodia elata	27.640
	SRR5643662	five period of Gastrodia elata	27.240
	SRR5643663	five period of Gastrodia elata	29.950
	SRR5643664	five period of Gastrodia elata	27.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.600
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.940
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	28.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.640
SRP279888	Gastro	Gastrodia elata tuber	43.13
	Juven	Juvenile tuber	29.99
	Mother_Gastro	Mother tuber of Gastrodia elata	26.58
	Mother_Juven	Mother tuber of Juvenile	34.24