Detail information of GWHGAAEX012220/evm.TU.scaffold_42.10


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG32262.00E-61DNA repair protein
nrgi|297743320|emb|CBI36187.3|2.56E-65unnamed protein product [Vitis vinifera]
Swissprottr|Q24JK4|XRCC1_ARATH5.00E-61DNA-repair protein XRCC1 {ECO:0000303|PubMed:11909950}
trEMBLtr|F6HX38|F6HX38_VITVI6.00E-66Putative uncharacterized protein {ECO:0000313|EMBL:CCB59508.1}
TAIRAT1G804202.00E-61BRCT domain-containing DNA repair protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000050378662407287-
Transcript Sequence

Network for GWHGAAEX012220

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00533.25BRCT661381.50E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10803XRCC1 Base excision repair map03410

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms55.100
SRR2545915Juvenile tuber36.760
SRP108465SRR5643513five period of Gastrodia elata10.360
SRR5643514five period of Gastrodia elata9.300
SRR5643515five period of Gastrodia elata9.220
SRR5643524five period of Gastrodia elata9.450
SRR5643525five period of Gastrodia elata7.230
SRR5643528five period of Gastrodia elata7.520
SRR5643658five period of Gastrodia elata8.530
SRR5643659five period of Gastrodia elata7.330
SRR5643660five period of Gastrodia elata7.860
SRR5643661five period of Gastrodia elata6.950
SRR5643662five period of Gastrodia elata7.530
SRR5643663five period of Gastrodia elata9.310
SRR5643664five period of Gastrodia elata7.680
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.320
SRR6049655Rhizomagastrodiae_C368-T10_good_18.920
SRR6049656Rhizomagastrodiae_C368-T07_good_117.780
SRR6049657Rhizomagastrodiae_C368-T07_good_120.310
SRR6049658Rhizomagastrodiae_C368-T04_good_121.780
SRR6049659Rhizomagastrodiae_C368-T04_good_128.840
SRR6049660Rhizomagastrodiae_C368-T01_good_120.310
SRR6049661Rhizomagastrodiae_C368-T04_good_118.310
SRR6049662Rhizomagastrodiae_C368-T01_good_114.880
SRR6049663Rhizomagastrodiae_C368-T01_good_116.060
SRR6049664Rhizomagastrodiae_C368-T10_good_115.210
SRR6049665Rhizomagastrodiae_C368-T10_good_115.210
SRP279888GastroGastrodia elata tuber 8.69
JuvenJuvenile tuber9.53
Mother_GastroMother tuber of Gastrodia elata 9.20
Mother_JuvenMother tuber of Juvenile 7.53