Gene detail

Detail information of GWHGAAEX012221/evm.TU.scaffold_42.12

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|56477991\|ref\|YP_159580.1\|	1.00E-92	ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
KOG	KOG0335	0	ATP-dependent RNA helicase
nr	gi\|719981205\|ref\|XP_010250056.1\|	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like isoform X2 [Nelumbo nucifera]
Swissprot	tr\|Q2R1M8\|RH52C_ORYSJ	0	DEAD-box ATP-dependent RNA helicase 52C
trEMBL	tr\|A5B299\|A5B299_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN78578.1}
TAIR	AT3G58570	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	484822	492437	+

Transcript Sequence
>GWHTAAEX012221 ATGCACGGCAAAGGCGCACCGGAACCGGATACATATTCTTCTGCGGCACGAACAACCGGCAAATATGTTCCGAGATTCCTGCGAAATCCAGGCGCTCCGGAACCGGATACATATTCTTCTGCGGCGCGAACAACCGGCAAATATGTTCCGAGCTTCCGGCGGAATCCAGGCGCTCCGGAACCGGATACATATTCTTCTGCGGCGCGAACAACCGGCAAATATGTTCCGAGTTTCCGGCGGAATCCAGGCGCTCCGGAACCGGATACATATTCTTCTGCGGCGCGAACAACCGGCAAATATGTTCCGAGATTCCTGCGAAATCCAGGCCGGGCTAATCCAGACCCAAAAACTCCCCAAGTAATCTCCGCTGATGAGATCGGAAATCTCCGAATCTCCGAATCCTCGGGTCCAGCGAATGGGGATCAAAACGGCATCGATTTCGACGCTTATGATGACATTCCCGTGGAAACGAGCGGATCTGATGTGCCCCCTCCGGCGGACTCTTTCTCAGATATCGACCTCGGCGAAGCCCTAAACCGAAATATTCAGCGGTGCCGGTACAGCAAGCCCACGCCGGTGCAGCGCTACGCCATCCCTATTTTACTAGCAGGAAGAGATCTCATGGCGAGCGCGCAGACGGGATCTGGAAAGACGGCCGCATTCTGCTTTCCGATCATAAGCGGGATATTAAAGAGACATGCTCCGCTGATTAGGAATGGAAGCCGCCGCCCTGGGCGCTCGGCGGCATGTCCTCTGGCGCTTATTCTTTCTCCCACCAGAGAGCTATCTTGCCAGATTTTTGACGAGGCGAAGAAGTTTTCTTATCAGTCGGGTCTTAGAGTTTGTGTGGTGTATGGAGGAACTCCGGCTTTTGGCCAGGTTCGTGATTTAGAGAAAGGAGTGGATGTCTTGGTGGCGACGCCAGGGCGGTTGATGGATCTAATCGAAAGAGGGAGCATATGGCTTGAAAAAGCGGAGTATTTGGTGCTGGACGAGGCGGACAGGATGCTGGACATGGGCTTCGAGCCCCAGATCAGAAGGATCGTTGAGCAGAGCGGCATGCCGCGGCCTGGCACCAGGCAAACTATGCTTTTCAGCGCCACCTTCCCGCATGCCGTGCAGCGCTTAGCATCGAGCTTCCTCTGCAATTATATTTTCCTGACTGTTGGGAGGGTTGGATCAAGCTCAGAGCTGATCGAGCAGAGGGTTGAGTATGTGACATCCGATTGGGATAAGAGAAACCGCTTGAAGGCTCTTCTTCTTCAACCCCCCAAGGACTGTCCTAACCATAATGAAAAGACGGCGTTGACGTTGGTATTCATGGAAACGAAGAAACGAGTGGACTCATTACAGAGCTGGTTGTGCAGGAATGGATTTCCGGCCGTTGCAATCCACGGGGGCCGAAATCAGCTCGAGCGAGAGGAGGCGCTGAGATCGTTCAAAGGGGGGGCGACGCGGACAATGGTGGCGACGGACGTGGCGGCGCGGGGGCTGGACATTCCGAGTGTGGGTCATGTGATAAACTTTGATTTTCCGAGGAACATGGACGACTACGTTCATCGCATAGGGCGGACGGGGCGGGCTGGGAGGAGCGGGCTGGCCACCGCTCTGTTCGGCCATGCCGACCTCCCCCTCGCCGGAGCGCTGGCGGAGCTCATGACGGAATCCGGCCAGGAGCCTCCCCATTGGCTCTTCCAGTACGCCACTACCGACGACGGCAAACCGAGATTTGCCGAGCACGATTTCAGGAAGGATGCTCTGTCCGAGGCAGTTCACGATTTCATGAAGGATGCTCAATCCGAAGCAGTTCATGATCATGATAGTGAGGCCAGCAATGCCGGCTATGATGTCGACACACAAAATCAGATTATCCCCACTGGATGCGAGTATGATCATATTGTCCCCACTGGATGCGAGTATGATCATATTGTCCCCACTGGATGGGATTAG

Network for GWHGAAEX012221

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	191	376	1.70E-49
PF00271.30	Helicase_C	412	529	3.80E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11594	DDX3X, bel	RIG-I-like receptor signaling pathway	map04622

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.550
SRP064423	SRR2545915	Juvenile tuber	2.570
SRP108465	SRR5643513	five period of Gastrodia elata	1.620
	SRR5643514	five period of Gastrodia elata	0.880
	SRR5643515	five period of Gastrodia elata	1.470
	SRR5643524	five period of Gastrodia elata	0.810
	SRR5643525	five period of Gastrodia elata	0.540
	SRR5643528	five period of Gastrodia elata	0.780
	SRR5643658	five period of Gastrodia elata	0.310
	SRR5643659	five period of Gastrodia elata	0.860
	SRR5643660	five period of Gastrodia elata	0.650
	SRR5643661	five period of Gastrodia elata	0.700
	SRR5643662	five period of Gastrodia elata	0.250
	SRR5643663	five period of Gastrodia elata	0.300
	SRR5643664	five period of Gastrodia elata	0.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.080
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.440
SRP279888	Gastro	Gastrodia elata tuber	1.06
	Juven	Juvenile tuber	1.26
	Mother_Gastro	Mother tuber of Gastrodia elata	1.88
	Mother_Juven	Mother tuber of Juvenile	2.01