Detail information of GWHGAAEX012222/evm.TU.scaffold_42.13
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743875139|ref|XP_010907261.1| | 1.03E-73 | PREDICTED: ethylene-responsive transcription factor WIN1-like [Elaeis guineensis] |
| Swissprot | tr|Q9XI33|WIN1_ARATH | 2.00E-66 | Ethylene-responsive transcription factor WIN1 |
| trEMBL | tr|M0U4B1|M0U4B1_MUSAM | 6.00E-71 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P28540_001} |
| TAIR | AT1G15360 | 8.00E-66 | Integrase-type DNA-binding superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 496810 | 497463 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012222
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 6 | 49 | 1.60E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.210 |
| SRR5643514 | five period of Gastrodia elata | 0.480 | |
| SRR5643515 | five period of Gastrodia elata | 0.590 | |
| SRR5643524 | five period of Gastrodia elata | 0.510 | |
| SRR5643525 | five period of Gastrodia elata | 2.250 | |
| SRR5643528 | five period of Gastrodia elata | 1.710 | |
| SRR5643658 | five period of Gastrodia elata | 1.290 | |
| SRR5643659 | five period of Gastrodia elata | 0.170 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.380 | |
| SRR5643662 | five period of Gastrodia elata | 1.330 | |
| SRR5643663 | five period of Gastrodia elata | 0.430 | |
| SRR5643664 | five period of Gastrodia elata | 1.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.630 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.640 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.700 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.720 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.92 |
| Juven | Juvenile tuber | 1.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.96 | |
| Mother_Juven | Mother tuber of Juvenile | 3.02 |