Gene detail

Detail information of GWHGAAEX012223/evm.TU.scaffold_42.14

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|470181905\|ref\|YP_007567780.1\|	7.00E-26	RalF protein, translocated into host cells by the Dot/Icm system [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
KOG	KOG0928	0	Pattern-formation protein/guanine nucleotide exchange factor
nr	gi\|743886482\|ref\|XP_010910154.1\|	0	PREDICTED: ARF guanine-nucleotide exchange factor GNOM-like [Elaeis guineensis]
Swissprot	tr\|Q42510\|GNOM_ARATH	0	ARF guanine-nucleotide exchange factor GNOM
trEMBL	tr\|A0A067L230\|A0A067L230_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP41243.1}
TAIR	AT1G13980	0	sec7 domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	497897	522822	-

Transcript Sequence
>GWHTAAEX012223 ATGGATCTCTGCTTATCTCCCGATCCAAAGGGCGGAAACTCCCAAATCTCCGATGCTTTTCTGATCACCCAATTCGCCGTCATGGGTCGTCTCCGTCTCCAGAATCCCAATATAAACTCCATCGATGAGGAGCCTCTCGTCAATGCCGACGCCGGCCAATCCCCTGCCTTGCCGAGGGAAAATTCCTATCACTGCTCCTTCGGCAATGCCTTGGCCTGTATGATTAATTCGGAAGTTAGTGCCGTCCTCGCCGTCATGCGCAGGAACGCCCGGTGGAGCGGCCGCTACGCATCAGCCTCCGACGACTATCTTGACCACTCTCTCATCCAATCTCTAAAATCTCTGCGTCATCAGCTTTTTTTGTGGGATCCCATCACATGGAGCTCCATCGACCCCTCTCTGTATCTCCGTCCTTTTCTCGACGTCATCCGCTCCGATGAAACCGGGGCTCCGATCACCGGCGTCGCACTCTCTTCTGTCTACAAAATCCTCAACCTCGAAGTGTTCGACTCCGGGTCTGCCCACGTTGATGATGCTATGCACGCCGTTGTGGATGCGGTTACTAGCTGCCGGTTCGAGGTGACTGATCCTGCGTCAGAGGAGGCGGTTCTGATGAAGATCCTGCAGGTGCTTCTGGCTTGCATGAAGAGCCGGGCGTCAAGGGTCCTCAGCAACCAGCATGTGTGTACCATTATCAATACTTGTTTTAGGATTGTTCATCAAGCGGGCACCAAGGGGGAGCTTCTGCAGAGAATTTCTCGCAACACTATGCATGAGCTTGTCCGTTGCATCTTCTTGCGATTGCCTGAAGTGAGCAAAAGCAATGGCAAACTTTCGTCGCTAGTTGAGATGGCTGGGGTTGACAAGGATCTTGCCTTTGGAATGAATCAAATGGAAAATGGCAATGTGAACTATGGGCCCATGACAGTCCCAACAGATGAGGCAACTGTGAGACTGGAAATGCCGACCGGCATGAAAATAATGGCTGAGCCATACAGCATACCCTGCATTGTGGAAGTATTCCACTTCCTGTGCTCTCTATTGAATATTGTGGAACAAATTGGGTTGAGTCCCAATGAAAACCCCATGGCCTTGGATGAAGATGTTCCACTTTTTGCTCTTGGGATGATCAATTCAGCTATTGAATTGGGGGGATCTTCAATAAGCAAGCACCCAAAGCTGCTTGCTTTGGTCCAGGATGAACTCTTTCGAAATCTAATGCAGTTTGGCCTGTCAACTAGCCCGTTGATTCTGTCAACTGTGTGCAGCATTGTTCTGAATCTTTACTATCACTTGCGCACAGAGCTTAAACTTCAAATTGAAGCATTTTTCTCATGTGTTATCTTGAGACTAGCACAGGGGAAATATGGGTCTAGTTACCACCAGCAAGAAGTCGCGATGGAAGCCCTTGTCGACTTCTGCAGGCAGAAAACTTTCATGACGGAGATGTATGCCAATCTGGACTGCGACATCACATGCAGCAATGTCTTTGAAGACCTTGCCAATCTCCTCTCAAGGAGCGCTTTCCCTGTCAATTGCCCATTATCTACAATGCACATTCTGGCTTTGGAAGGTCTTATTGCAGTGATTCAGCGAATGGCAGATAGAATTATCAACGCTCCACCGAGCTTGCGTCAGGCAGCGCTGGAACTTGACAGCTATACACCATTCTGGACAGTGAAGTGCGAAAACTATTCTGATCCCGAGCAATGGCTCAAATTTGTTCGCCGCAAGAAGTATATCAAGAAAAGGTTAATGATTGGGGCAGATCACTTCAACAGAGATCCAAAGAAGGGTCTTGAGTTTCTGCAGGGAAACCATCTTCTGCCTGAGAAGCTGGACCCTCAGAGCGTGGCGTGCTTTTTCAGATACACCGCTGGGCTGGATAAAAACCTTGTCGGGGATTTCCTGGGGAACCACGATGACTTTTGCGTGCAGGTTCTTCATGAATTTGCCCGTACCTTCGATTTCCAGGATATGAATCCGGATACTGCTTTAAGACTCTTTTTGGAGACATTCCGCTTACCCGGCGAGTCTCAGAAAATACAAAGGGTGCTCGAGGCCTTCTCCGAGAGATATTATGAGCAATCACCCCACATTCTTGCTAATAAGGATGCTGCCCTCTTGCTTTCGTACTCGCTCATAATGCTCAATACAGATCAGCATAATGTGCAAGTGAAGAAGAAGATGACGGAGCAGGACTTTATACATAACAATCGTCATATCAACGGCGGGAATGACCTTCCTAGGGAATACCTGTCGGAGCTCTACAGCTCTATATGCAAGAATGAAATAAGAACCACTCCAGATTCTGGCATCGGCTTTCCCGAGATGTCCCCAAGCCGTTGGATTGATCTGATGAGGAAATCAAAAAAGACTTCTCCTTACATTGTCTGTGATTTTCGTCCTTACCTTGATCATGACATGTTTGTCATCATGTCTGGCCCAACCATTGCTGCTATCTCCGTTGTGTTTGATTATGCGGAGCATGAAGATGTTTTTCTAACGTGCATAGATGGCTTTTTGGCTGTGGCAAAAATATCAGCATATCACCATCTCGAAGATGTTTTAGACGATCTTGTTGTGTCACTATGCAAGTTCACAACCCTACTGAGCACTTCATTGGCGGAGGAACAAGTTACGGCATTCGGGGATGACACCAAAGCTAGGTTTGCAACTGAGACGGTTTTCATCATCGCGAATTTGTACGGCGATCATATACGTACTGGCTGGAGAAACATCCTTGATTGCATCTTAAGGCTGCACAAGCTGGGCCTTCTTCCTGCTCGTGTGGCTAGTGATGTGGCTGACGACACAGAGCTGATGCCTGCAGATGCAGCTCATGGGAAACCCTCCCTGAGCTTCTTTTCGGCATCTCACGCAATGGGGACCCCTCGCAGATCCTCCGGGCTGATGGGAAGGTTCAGTCAGTTGCTATCCCTCGACACAGAGGAGCCGAGAACACAGCCGACCGAGCAGCAGCTTGCTGCTCACCAAAGAACCCTTCAGACAATTCAAAAGTGCCGCATAGATAGCATATTCACAGAGAGCAAATTCCTCCATACCGATTCACTACTCCATCTTGCCAAGGCTCTCATCTGGGCGGCTGGCAAACCTCAGAAGATCACGAGCTCACCCGACGACGAGGACACAGCTGTTTTCTGTTTGGAACTGCTCATTGCTGTCACCTTGAACAATCGAGATCGCATCTTTCTTCTCTGGCAGGGTGTGTATGACCACATAGCCAACATAGTTCAGTCTACCGTGATGCGCAGCCCTCTCGTGGAGAAAGCGGTGTTCGGAATTCTCAGAATCTGTCAGCGGCTCCTCCCTTATAAAGAGAACCTGGCCGACGAGCTTCTGAGATCACTGCAGTTAGTCCTGAAGCTCGACGCACGCGTGGCCGATGCTTACTGCGAGAACATCACGCAGGAAGTATCGCGGCTGGTGAAAGCAAATGCGTCTCATATAAAGTCCCAGGCAGGCTGGAAGACCATCATGTCCTTGCTGTCCATCACTGCCCGTCACTCCGAAGCTTCCGAAGTCGGTTTTCAAGCGGTCGCCTTCATCATGTTCGAAGGGTCGCACCTCTCGCCGGCCAACTATCTTCTTTGCATCGAGGCGTCGCGACAGTTTGCAGAATCTCGCGTCGGTCCCTCTGACCGATCGATCCGCGCGCTTGACCTGATGGCCGATTCCATGGATTGCCTCGTTCGTTGGTCTCGAGAGATCGAAGATGAAAAATCGTCGTCCGAAGGAGTTCGGGACATGTGGCTGAAGCTTGTTCAGGTGCTCAGAAAACTGGCGATCGATCAGAGAGAGGAGGTGAGGAATCACGCCGTGCTGCTTCTGCAGAAATGCTTCTCTGGAGCTGATCCAATCTGCACGGCATTGCCATCGTTGTGGCCGCAGTCTCTCGAGACCGTCGTGTTTGCGATGGTCGACGACTTGCTCGAGACTGTCCAAAGCCAGTCGCAGAAGGATTATCGGAACATGGAGGGAACTCTCGTGCAAGCCATGAAGGTGGTATCAAAGGTGTTCCTGCAGCTGCTGCAGGAGCTCTCAGAACTGAGCGGCTTCTGCAAGCTGTGGTTGGGGGTTCTCAGCCGCTTCGAAAAATGCACGACGGCAAGACTGAGGGGGAAGCGGAGCGAGAAGCTCCAAGAGCTGATTCCGGAATTGGTGAAGAACATACTGATGGTGATGAAGTCAAAGGGAATCCTTGCTGCCAAAAGGAGCTCCATAGGCGGAGACAGCCTGTGGGAGCTGACATGGCTCCATCTCAGTAACTACGCTCCGTCGTTGCAGTCGGAAGTGTTTGGCCTCGAGCTTGACCAAGATACTGCCAGCCATACAGAGCCTGATGGCTGA

Network for GWHGAAEX012223

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12783.6	Sec7_N	335	496	2.10E-33
PF01369.19	Sec7	582	765	1.50E-63

Protein Sequence

>GWHPAAEX012223
MDLCLSPDPKGGNSQISDAFLITQFAVMGRLRLQNPNINSIDEEPLVNADAGQSPALPRENSYHCSFGNALACMINSEVSAVLAVMRRNARWSGRYASASDDYLDHSLIQSLKSLRHQLFLWDPITWSSIDPSLYLRPFLDVIRSDETGAPITGVALSSVYKILNLEVFDSGSAHVDDAMHAVVDAVTSCRFEVTDPASEEAVLMKILQVLLACMKSRASRVLSNQHVCTIINTCFRIVHQAGTKGELLQRISRNTMHELVRCIFLRLPEVSKSNGKLSSLVEMAGVDKDLAFGMNQMENGNVNYGPMTVPTDEATVRLEMPTGMKIMAEPYSIPCIVEVFHFLCSLLNIVEQIGLSPNENPMALDEDVPLFALGMINSAIELGGSSISKHPKLLALVQDELFRNLMQFGLSTSPLILSTVCSIVLNLYYHLRTELKLQIEAFFSCVILRLAQGKYGSSYHQQEVAMEALVDFCRQKTFMTEMYANLDCDITCSNVFEDLANLLSRSAFPVNCPLSTMHILALEGLIAVIQRMADRIINAPPSLRQAALELDSYTPFWTVKCENYSDPEQWLKFVRRKKYIKKRLMIGADHFNRDPKKGLEFLQGNHLLPEKLDPQSVACFFRYTAGLDKNLVGDFLGNHDDFCVQVLHEFARTFDFQDMNPDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPHILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEQDFIHNNRHINGGNDLPREYLSELYSSICKNEIRTTPDSGIGFPEMSPSRWIDLMRKSKKTSPYIVCDFRPYLDHDMFVIMSGPTIAAISVVFDYAEHEDVFLTCIDGFLAVAKISAYHHLEDVLDDLVVSLCKFTTLLSTSLAEEQVTAFGDDTKARFATETVFIIANLYGDHIRTGWRNILDCILRLHKLGLLPARVASDVADDTELMPADAAHGKPSLSFFSASHAMGTPRRSSGLMGRFSQLLSLDTEEPRTQPTEQQLAAHQRTLQTIQKCRIDSIFTESKFLHTDSLLHLAKALIWAAGKPQKITSSPDDEDTAVFCLELLIAVTLNNRDRIFLLWQGVYDHIANIVQSTVMRSPLVEKAVFGILRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCENITQEVSRLVKANASHIKSQAGWKTIMSLLSITARHSEASEVGFQAVAFIMFEGSHLSPANYLLCIEASRQFAESRVGPSDRSIRALDLMADSMDCLVRWSREIEDEKSSSEGVRDMWLKLVQVLRKLAIDQREEVRNHAVLLLQKCFSGADPICTALPSLWPQSLETVVFAMVDDLLETVQSQSQKDYRNMEGTLVQAMKVVSKVFLQLLQELSELSGFCKLWLGVLSRFEKCTTARLRGKRSEKLQELIPELVKNILMVMKSKGILAAKRSSIGGDSLWELTWLHLSNYAPSLQSEVFGLELDQDTASHTEPDG

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18443	GBF1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0032012	Biological Process	regulation of ARF protein signal transduction
GO:0005086	Molecular Function	ARF guanyl-nucleotide exchange factor activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.530
SRP064423	SRR2545915	Juvenile tuber	22.030
SRP108465	SRR5643513	five period of Gastrodia elata	23.710
	SRR5643514	five period of Gastrodia elata	21.520
	SRR5643515	five period of Gastrodia elata	23.980
	SRR5643524	five period of Gastrodia elata	23.140
	SRR5643525	five period of Gastrodia elata	21.900
	SRR5643528	five period of Gastrodia elata	21.030
	SRR5643658	five period of Gastrodia elata	21.170
	SRR5643659	five period of Gastrodia elata	33.590
	SRR5643660	five period of Gastrodia elata	28.350
	SRR5643661	five period of Gastrodia elata	29.780
	SRR5643662	five period of Gastrodia elata	32.420
	SRR5643663	five period of Gastrodia elata	28.260
	SRR5643664	five period of Gastrodia elata	32.890
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.730
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	28.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.700
SRP279888	Gastro	Gastrodia elata tuber	20.55
	Juven	Juvenile tuber	20.65
	Mother_Gastro	Mother tuber of Gastrodia elata	22.30
	Mother_Juven	Mother tuber of Juvenile	15.76