Detail information of GWHGAAEX012224/evm.TU.scaffold_42.15


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|255533925|ref|YP_003094297.1|4.00E-21rhomboid family protein [Pedobacter heparinus DSM 2366]
KOGKOG22893.00E-108Rhomboid family proteins
nrgi|695006048|ref|XP_009389498.1|2.16E-125PREDICTED: inactive rhomboid protein 1 isoform X1 [Musa acuminata subsp. malaccensis]
trEMBLtr|A0A061GHE3|A0A061GHE3_THECC5.00E-117RHOMBOID-like protein 5 {ECO:0000313|EMBL:EOY26474.1}
TAIRAT1G525803.00E-108RHOMBOID-like protein 5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000050524163540802-
Transcript Sequence

Network for GWHGAAEX012224

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01694.21Rhomboid942331.60E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0004252Molecular Functionserine-type endopeptidase activity
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.560
SRR2545915Juvenile tuber7.150
SRP108465SRR5643513five period of Gastrodia elata11.260
SRR5643514five period of Gastrodia elata11.780
SRR5643515five period of Gastrodia elata10.540
SRR5643524five period of Gastrodia elata10.610
SRR5643525five period of Gastrodia elata21.410
SRR5643528five period of Gastrodia elata22.450
SRR5643658five period of Gastrodia elata22.230
SRR5643659five period of Gastrodia elata7.730
SRR5643660five period of Gastrodia elata6.480
SRR5643661five period of Gastrodia elata6.740
SRR5643662five period of Gastrodia elata6.470
SRR5643663five period of Gastrodia elata6.480
SRR5643664five period of Gastrodia elata6.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.720
SRR6049655Rhizomagastrodiae_C368-T10_good_110.720
SRR6049656Rhizomagastrodiae_C368-T07_good_110.200
SRR6049657Rhizomagastrodiae_C368-T07_good_16.600
SRR6049658Rhizomagastrodiae_C368-T04_good_16.850
SRR6049659Rhizomagastrodiae_C368-T04_good_16.400
SRR6049660Rhizomagastrodiae_C368-T01_good_17.980
SRR6049661Rhizomagastrodiae_C368-T04_good_16.810
SRR6049662Rhizomagastrodiae_C368-T01_good_17.640
SRR6049663Rhizomagastrodiae_C368-T01_good_16.090
SRR6049664Rhizomagastrodiae_C368-T10_good_112.060
SRR6049665Rhizomagastrodiae_C368-T10_good_112.060
SRP279888GastroGastrodia elata tuber 5.44
JuvenJuvenile tuber5.39
Mother_GastroMother tuber of Gastrodia elata 10.82
Mother_JuvenMother tuber of Juvenile 3.90