Detail information of GWHGAAEX012228/evm.TU.scaffold_42.19
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|501435994|ref|YP_007984788.1| | 2.00E-12 | RNP-1 like RNA-binding protein [Candidatus Saccharimonas aalborgensis] |
| KOG | KOG0123 | 0 | Polyadenylate-binding protein (RRM superfamily) |
| nr | gi|672139416|ref|XP_008793488.1| | 0 | PREDICTED: polyadenylate-binding protein 3 [Phoenix dactylifera] |
| Swissprot | tr|Q05196|PABP5_ARATH | 0 | Polyadenylate-binding protein 5 |
| trEMBL | tr|F6HJE0|F6HJE0_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB52339.1} |
| TAIR | AT1G71770 | 0 | poly(A)-binding protein 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 589133 | 606995 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012228
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 35 | 105 | 7.10E-18 |
| PF00076.21 | RRM_1 | 123 | 191 | 4.80E-20 |
| PF00076.21 | RRM_1 | 214 | 282 | 3.50E-19 |
| PF00076.21 | RRM_1 | 317 | 385 | 9.50E-19 |
| PF00658.17 | PABP | 566 | 632 | 1.20E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13126 | PABPC | RNA transport | map03013 |
| mRNA surveillance pathway | map03015 | ||
| RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.430 |
| SRR2545915 | Juvenile tuber | 11.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.430 |
| SRR5643514 | five period of Gastrodia elata | 6.960 | |
| SRR5643515 | five period of Gastrodia elata | 6.200 | |
| SRR5643524 | five period of Gastrodia elata | 5.640 | |
| SRR5643525 | five period of Gastrodia elata | 8.240 | |
| SRR5643528 | five period of Gastrodia elata | 6.480 | |
| SRR5643658 | five period of Gastrodia elata | 5.040 | |
| SRR5643659 | five period of Gastrodia elata | 10.160 | |
| SRR5643660 | five period of Gastrodia elata | 15.050 | |
| SRR5643661 | five period of Gastrodia elata | 10.770 | |
| SRR5643662 | five period of Gastrodia elata | 13.620 | |
| SRR5643663 | five period of Gastrodia elata | 12.960 | |
| SRR5643664 | five period of Gastrodia elata | 11.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.770 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.870 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.510 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.740 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.740 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.79 |
| Juven | Juvenile tuber | 8.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.35 | |
| Mother_Juven | Mother tuber of Juvenile | 13.10 |