Detail information of GWHGAAEX012229/evm.TU.scaffold_42.20
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 3.00E-12 | two component regulator [Flavobacterium johnsoniae UW101] |
| nr | gi|695004519|ref|XP_009388671.1| | 0 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9M9S4|Y1143_ARATH | 1.00E-176 | Probable LRR receptor-like serine/threonine-protein kinase At1g14390 (Precursor) |
| trEMBL | tr|M0S9F5|M0S9F5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P19640_001} |
| TAIR | AT1G14390 | 7.00E-174 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 607990 | 612238 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012229
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12799.6 | LRR_4 | 196 | 233 | 2.60E-06 |
| PF07714.16 | Pkinase_Tyr | 416 | 683 | 2.30E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-VI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.470 |
| SRR2545915 | Juvenile tuber | 16.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.340 |
| SRR5643514 | five period of Gastrodia elata | 23.510 | |
| SRR5643515 | five period of Gastrodia elata | 33.250 | |
| SRR5643524 | five period of Gastrodia elata | 28.610 | |
| SRR5643525 | five period of Gastrodia elata | 22.890 | |
| SRR5643528 | five period of Gastrodia elata | 29.340 | |
| SRR5643658 | five period of Gastrodia elata | 24.040 | |
| SRR5643659 | five period of Gastrodia elata | 15.940 | |
| SRR5643660 | five period of Gastrodia elata | 20.130 | |
| SRR5643661 | five period of Gastrodia elata | 26.070 | |
| SRR5643662 | five period of Gastrodia elata | 12.870 | |
| SRR5643663 | five period of Gastrodia elata | 12.810 | |
| SRR5643664 | five period of Gastrodia elata | 13.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.760 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.04 |
| Juven | Juvenile tuber | 18.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.93 | |
| Mother_Juven | Mother tuber of Juvenile | 5.29 |