Detail information of GWHGAAEX012230/evm.TU.scaffold_42.21
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|147677811|ref|YP_001212026.1| | 2.00E-53 | ABC-type multidrug transport system, ATPase component [Pelotomaculum thermopropionicum SI] |
| KOG | KOG0059 | 0 | Lipid exporter ABCA1 and related proteins, ABC superfamily |
| nr | gi|586687281|ref|XP_006842160.1| | 0 | hypothetical protein AMTR_s00078p00140160 [Amborella trichopoda] |
| Swissprot | tr|Q9FLT8|AB12A_ARATH | 0 | ABC transporter A family member 12 |
| trEMBL | tr|W1PA18|W1PA18_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN03835.1} |
| TAIR | AT3G47780 | 0 | ABC2 homolog 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 620353 | 630246 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012230
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12698.6 | ABC2_membrane_3 | 347 | 571 | 2.70E-13 |
| PF00005.26 | ABC_tran | 660 | 804 | 2.90E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005524 | Molecular Function | ATP binding |
| GO:0016887 | Molecular Function | ATPase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.410 |
| SRR2545915 | Juvenile tuber | 9.950 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.390 |
| SRR5643514 | five period of Gastrodia elata | 4.170 | |
| SRR5643515 | five period of Gastrodia elata | 4.870 | |
| SRR5643524 | five period of Gastrodia elata | 4.220 | |
| SRR5643525 | five period of Gastrodia elata | 6.070 | |
| SRR5643528 | five period of Gastrodia elata | 4.160 | |
| SRR5643658 | five period of Gastrodia elata | 5.560 | |
| SRR5643659 | five period of Gastrodia elata | 8.560 | |
| SRR5643660 | five period of Gastrodia elata | 9.540 | |
| SRR5643661 | five period of Gastrodia elata | 7.720 | |
| SRR5643662 | five period of Gastrodia elata | 6.880 | |
| SRR5643663 | five period of Gastrodia elata | 9.120 | |
| SRR5643664 | five period of Gastrodia elata | 8.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.770 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.770 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.65 |
| Juven | Juvenile tuber | 7.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.05 | |
| Mother_Juven | Mother tuber of Juvenile | 4.35 |