Detail information of GWHGAAEX012234/evm.TU.scaffold_42.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|218962074|ref|YP_001741849.1| | 9.00E-68 | putative zinc-carboxypeptidase D precursor (metallocarboxypeptidase D) (Cbp module); putative carbohydrate binding domain; putative signal peptide [Candidatus Cloacimonas acidaminovorans str. Evry] |
| KOG | KOG2649 | 5.00E-146 | Zinc carboxypeptidase |
| nr | gi|743769555|ref|XP_010915069.1| | 0 | PREDICTED: carboxypeptidase D [Elaeis guineensis] |
| trEMBL | tr|M0RK28|M0RK28_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P21030_001} |
| TAIR | AT1G71696 | 5.00E-146 | carboxypeptidase D, putative |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 691517 | 772268 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012234
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00246.23 | Peptidase_M14 | 73 | 329 | 2.50E-62 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004181 | Molecular Function | metallocarboxypeptidase activity |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.690 |
| SRR2545915 | Juvenile tuber | 9.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.710 |
| SRR5643514 | five period of Gastrodia elata | 14.070 | |
| SRR5643515 | five period of Gastrodia elata | 11.770 | |
| SRR5643524 | five period of Gastrodia elata | 12.160 | |
| SRR5643525 | five period of Gastrodia elata | 15.350 | |
| SRR5643528 | five period of Gastrodia elata | 10.730 | |
| SRR5643658 | five period of Gastrodia elata | 15.330 | |
| SRR5643659 | five period of Gastrodia elata | 8.300 | |
| SRR5643660 | five period of Gastrodia elata | 7.080 | |
| SRR5643661 | five period of Gastrodia elata | 8.520 | |
| SRR5643662 | five period of Gastrodia elata | 8.490 | |
| SRR5643663 | five period of Gastrodia elata | 9.730 | |
| SRR5643664 | five period of Gastrodia elata | 9.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.560 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.950 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.710 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.80 |
| Juven | Juvenile tuber | 13.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.16 | |
| Mother_Juven | Mother tuber of Juvenile | 9.14 |