Detail information of GWHGAAEX012238/evm.TU.scaffold_42.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|337286407|ref|YP_004625880.1| | 3.00E-77 | DNA mismatch repair protein MutS [Thermodesulfatator indicus DSM 15286] |
| KOG | KOG0217 | 4.00E-71 | Mismatch repair ATPase MSH6 (MutS family) |
| nr | gi|743769524|ref|XP_010915052.1| | 0 | PREDICTED: DNA mismatch repair protein MSH7 [Elaeis guineensis] |
| Swissprot | tr|Q9SMV7|MSH7_ARATH | 0 | DNA mismatch repair protein MSH7 |
| trEMBL | tr|M0TH66|M0TH66_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P13290_001} |
| TAIR | AT4G02070 | 4.00E-71 | MUTS homolog 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 862989 | 910215 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012238
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01624.19 | MutS_I | 268 | 378 | 2.50E-30 |
| PF05188.16 | MutS_II | 388 | 534 | 1.50E-11 |
| PF05192.17 | MutS_III | 556 | 769 | 1.40E-28 |
| PF00488.20 | MutS_V | 835 | 1024 | 1.20E-72 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08737 | MSH6 | Mismatch repair | map03430 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006298 | Biological Process | mismatch repair |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0030983 | Molecular Function | mismatched DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 35.470 |
| SRR2545915 | Juvenile tuber | 28.060 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.530 |
| SRR5643514 | five period of Gastrodia elata | 7.440 | |
| SRR5643515 | five period of Gastrodia elata | 6.780 | |
| SRR5643524 | five period of Gastrodia elata | 6.530 | |
| SRR5643525 | five period of Gastrodia elata | 9.800 | |
| SRR5643528 | five period of Gastrodia elata | 8.360 | |
| SRR5643658 | five period of Gastrodia elata | 9.050 | |
| SRR5643659 | five period of Gastrodia elata | 6.760 | |
| SRR5643660 | five period of Gastrodia elata | 6.620 | |
| SRR5643661 | five period of Gastrodia elata | 6.840 | |
| SRR5643662 | five period of Gastrodia elata | 7.130 | |
| SRR5643663 | five period of Gastrodia elata | 6.410 | |
| SRR5643664 | five period of Gastrodia elata | 6.740 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.360 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.87 |
| Juven | Juvenile tuber | 12.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.45 | |
| Mother_Juven | Mother tuber of Juvenile | 19.66 |