Detail information of GWHGAAEX012240/evm.TU.scaffold_42.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|148658115|ref|YP_001278320.1| | 1.00E-34 | NB-ARC domain-containing protein [Roseiflexus sp. RS-1] |
| KOG | KOG0276 | 0 | Vesicle coat complex COPI, beta' subunit |
| nr | gi|672199413|ref|XP_008777605.1| | 0 | PREDICTED: coatomer subunit beta'-1 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q5VQ78|COB21_ORYSJ | 0 | Coatomer subunit beta'-1 |
| trEMBL | tr|A0A059BVC3|A0A059BVC3_EUCGR | 0 | Uncharacterized protein {ECO:0000313|EMBL:KCW69590.1} |
| TAIR | AT1G52360 | 0 | Coatomer, beta' subunit |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 968927 | 1005086 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012240
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 93 | 127 | 2.10E-05 |
| PF00400.31 | WD40 | 134 | 171 | 0.00019 |
| PF00400.31 | WD40 | 177 | 215 | 8.30E-06 |
| PF00400.31 | WD40 | 220 | 256 | 8.40E-09 |
| PF04053.13 | Coatomer_WDAD | 319 | 763 | 2.50E-161 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005198 | Molecular Function | structural molecule activity |
| GO:0030117 | Cellular Component | membrane coat |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 57.050 |
| SRR2545915 | Juvenile tuber | 68.760 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 55.140 |
| SRR5643514 | five period of Gastrodia elata | 64.060 | |
| SRR5643515 | five period of Gastrodia elata | 60.450 | |
| SRR5643524 | five period of Gastrodia elata | 63.570 | |
| SRR5643525 | five period of Gastrodia elata | 50.090 | |
| SRR5643528 | five period of Gastrodia elata | 54.120 | |
| SRR5643658 | five period of Gastrodia elata | 53.250 | |
| SRR5643659 | five period of Gastrodia elata | 61.020 | |
| SRR5643660 | five period of Gastrodia elata | 66.230 | |
| SRR5643661 | five period of Gastrodia elata | 62.110 | |
| SRR5643662 | five period of Gastrodia elata | 58.180 | |
| SRR5643663 | five period of Gastrodia elata | 60.880 | |
| SRR5643664 | five period of Gastrodia elata | 57.690 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 47.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 45.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 57.440 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 49.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 42.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 45.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 52.120 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 68.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 55.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 64.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 64.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 68.69 |
| Juven | Juvenile tuber | 92.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 66.24 | |
| Mother_Juven | Mother tuber of Juvenile | 91.63 |