Gene detail

Detail information of GWHGAAEX012245/evm.TU.scaffold_42.36

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	2.00E-69	FOG: Predicted E3 ubiquitin ligase
nr	gi\|731311483\|ref\|XP_010669733.1\|	1.88E-77	PREDICTED: RING-H2 finger protein ATL67-like [Beta vulgaris subsp. vulgaris]
Swissprot	tr\|Q9M313\|ATL68_ARATH	5.00E-70	RING-H2 finger protein ATL68
trEMBL	tr\|K4CYG6\|K4CYG6_SOLLC	2.00E-70	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc10g011880.1.1}
TAIR	AT3G61550	2.00E-69	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	1052636	1054118	+

Transcript Sequence
>GWHTAAEX012245 ATGTCCTCCTCCGGCGGCCTTTCCTCGGCCTCCGCCTCCTCCTCCTCCTCCTCCACTTCGTCTGTGACCTCCTTCCTGAGAGGCCTCAGCAATCTAGGTTTAGGCTATGCTATCGCCATAGCCCTTGGCCTCCTCGTCCTCCTCTCCACTCTCCTCCTCACTTCCTACATCTGCTGCCGCGCCTCCTCTCGCCGACGTCAGATTCGTTCATCCACCTCCGATCCTACCGAAGGAATCGTCCTTCCCCGCATCATTTTCGTGGCGGAGGACGACGAAGAGGACGAGGGACGACAGAACGGCTTGTCGGGAGGTACTGCCATTGGGCTTGATCCGATCGCCATCTCATCGTACCCGAAATTTCAATTTTCGGCTCCGGCGGAGAAGGGGAAAGGAGAGCGAGACGGCGCTTGCGCCATCTGCCTGTGTGACTACCGGGAGGGGGAGATGCTGCGGATGATGCCCGACTGCGGCCATTATTTCCACCTCATGTGCATCGATGCATGGCTCCGTCTCAACGCCTCATGCCCTGTCTGCCGAAACTCTCCCATGCCTACGCCGCAATCAACCCCACTATCGACTCCGCTATCTGAGCTTGTTCCACTATCCCAATTTGCGGGTGGCCGCAGACTTAGGTGATGCTCTTCCTTATATTCCATCGAAATCCTTAGAATTTACATACCCTGCACTCCAATTTTTATGTTTTGGTCATCTGTGAGATCTCTTCCCCCTTTAATATCCAAAAACAGATAAGTAGGATTATATTTTTGATAAATTTAGAAAAAGTTCAGTGCTGTATCGGTGAATTTTAAACTTTGGGTGGTTGATAAGTAAATTGTAAAGATTTCGGTGCTTTGTATGATAGGAAAACCCTTTTGGGGTTGTCTTATCCTCGCACACCTTTGGTTCTGTTTCTGTGAGGATTTTCTTTTTGGCAGATCTGGGAGGCAGCTTAACGCTGTTTATATCATATTATTAAATAATATGATGTCCTGTTGCCTGATTTGTTTTTATTATTTGACTACGACATTTTTGTTTTATTCTTTATGTTAGTCGGAACTTCTGTATTAGGAAAAGTAAAGCACTTGGTTTGGTTTCTTGAATGAGATATGTGAGTTCTATGCGTAATAATTAGACAGTTTGGGATTTTTTTTCAGTAATTAATTAAACTCTTATTGTTTTTAGATTATTATTATTATTATTTAAAAATGGGATGTTACCTCTTTTAAACCTAAATTATCTACATGAGGTGAATGGTGTTATGACAGAGTTGTTAGGGCCGACCACATAATTGACAGGTTAAGAGTTCAAATCTTGCCGACCACATAATTGAGTCATCGAGGTTTATCTTCTTTCAAAACAATAAATTATCTGTATGATTCTCTTGACTATGATTCAGTTTTGTTAGGCAAACATATCTAAATGAGTGAAGAATGCTTGATGCTATGTGTTACAAAGTGGTTGCAAAGGGCAACTTGAGTAAAAA

Network for GWHGAAEX012245

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	136	179	1.10E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.390
SRP064423	SRR2545915	Juvenile tuber	5.000
SRP108465	SRR5643513	five period of Gastrodia elata	3.050
	SRR5643514	five period of Gastrodia elata	4.110
	SRR5643515	five period of Gastrodia elata	3.520
	SRR5643524	five period of Gastrodia elata	4.420
	SRR5643525	five period of Gastrodia elata	5.380
	SRR5643528	five period of Gastrodia elata	4.930
	SRR5643658	five period of Gastrodia elata	3.120
	SRR5643659	five period of Gastrodia elata	5.860
	SRR5643660	five period of Gastrodia elata	7.570
	SRR5643661	five period of Gastrodia elata	6.800
	SRR5643662	five period of Gastrodia elata	5.390
	SRR5643663	five period of Gastrodia elata	5.530
	SRR5643664	five period of Gastrodia elata	6.380
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.660
SRP279888	Gastro	Gastrodia elata tuber	7.70
	Juven	Juvenile tuber	7.94
	Mother_Gastro	Mother tuber of Gastrodia elata	5.67
	Mother_Juven	Mother tuber of Juvenile	6.66