Detail information of GWHGAAEX012251/evm.TU.scaffold_42.47
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 2.00E-48 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|695065755|ref|XP_009421476.1| | 0 | PREDICTED: receptor-like protein kinase HSL1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SGP2|HSL1_ARATH | 0 | Receptor-like protein kinase HSL1 (Precursor) |
| trEMBL | tr|K3XE56|K3XE56_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si000173m} |
| TAIR | AT1G28440 | 0 | HAESA-like 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 1271236 | 1275164 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012251
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 20 | 59 | 3.60E-11 |
| PF13855.5 | LRR_8 | 134 | 192 | 1.10E-07 |
| PF13855.5 | LRR_8 | 231 | 291 | 2.00E-08 |
| PF00069.24 | Pkinase | 687 | 911 | 6.10E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.860 |
| SRR2545915 | Juvenile tuber | 10.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 34.980 |
| SRR5643514 | five period of Gastrodia elata | 31.980 | |
| SRR5643515 | five period of Gastrodia elata | 30.220 | |
| SRR5643524 | five period of Gastrodia elata | 35.120 | |
| SRR5643525 | five period of Gastrodia elata | 39.750 | |
| SRR5643528 | five period of Gastrodia elata | 19.610 | |
| SRR5643658 | five period of Gastrodia elata | 41.410 | |
| SRR5643659 | five period of Gastrodia elata | 11.390 | |
| SRR5643660 | five period of Gastrodia elata | 12.950 | |
| SRR5643661 | five period of Gastrodia elata | 10.110 | |
| SRR5643662 | five period of Gastrodia elata | 8.590 | |
| SRR5643663 | five period of Gastrodia elata | 8.810 | |
| SRR5643664 | five period of Gastrodia elata | 8.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.440 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 25.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 26.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 41.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.01 |
| Juven | Juvenile tuber | 10.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.19 | |
| Mother_Juven | Mother tuber of Juvenile | 4.15 |