Detail information of GWHGAAEX012256/evm.TU.scaffold_42.53


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|720037133|ref|XP_010267577.1|5.90E-24PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic-like isoform X2 [Nelumbo nucifera]
Swissprottr|Q8VY91|RR6_ARATH2.00E-2030S ribosomal protein S6 alpha, chloroplastic (Precursor)
trEMBLtr|C6T002|C6T002_SOYBN8.00E-23Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G36670.1}
TAIRAT1G645108.00E-20Translation elongation factor EF1B/ribosomal protein S6 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005013135411313978+
Transcript Sequence

Network for GWHGAAEX012256

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02990RP-S6, MRPS6, rpsF Ribosome map03010

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.630
SRR2545915Juvenile tuber1.840
SRP108465SRR5643513five period of Gastrodia elata3.900
SRR5643514five period of Gastrodia elata0.750
SRR5643515five period of Gastrodia elata1.210
SRR5643524five period of Gastrodia elata1.040
SRR5643525five period of Gastrodia elata0.750
SRR5643528five period of Gastrodia elata0.670
SRR5643658five period of Gastrodia elata0.750
SRR5643659five period of Gastrodia elata2.340
SRR5643660five period of Gastrodia elata1.450
SRR5643661five period of Gastrodia elata2.610
SRR5643662five period of Gastrodia elata2.370
SRR5643663five period of Gastrodia elata3.740
SRR5643664five period of Gastrodia elata2.690
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_14.360
SRR6049655Rhizomagastrodiae_C368-T10_good_13.750
SRR6049656Rhizomagastrodiae_C368-T07_good_11.840
SRR6049657Rhizomagastrodiae_C368-T07_good_11.640
SRR6049658Rhizomagastrodiae_C368-T04_good_14.640
SRR6049659Rhizomagastrodiae_C368-T04_good_11.940
SRR6049660Rhizomagastrodiae_C368-T01_good_13.530
SRR6049661Rhizomagastrodiae_C368-T04_good_12.160
SRR6049662Rhizomagastrodiae_C368-T01_good_18.170
SRR6049663Rhizomagastrodiae_C368-T01_good_19.080
SRR6049664Rhizomagastrodiae_C368-T10_good_16.860
SRR6049665Rhizomagastrodiae_C368-T10_good_16.860
SRP279888GastroGastrodia elata tuber 5.67
JuvenJuvenile tuber1.69
Mother_GastroMother tuber of Gastrodia elata 1.19
Mother_JuvenMother tuber of Juvenile 1.40