Detail information of GWHGAAEX012257/evm.TU.scaffold_42.54
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743837079|ref|XP_010936288.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9S7R4|PP125_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g74900, mitochondrial (Precursor) |
| trEMBL | tr|M0SMU5|M0SMU5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P10780_001} |
| TAIR | AT1G74900 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 1314225 | 1315784 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012257
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 194 | 218 | 0.0084 |
| PF13041.5 | PPR_2 | 225 | 272 | 5.80E-09 |
| PF12854.6 | PPR_1 | 297 | 328 | 9.50E-11 |
| PF13041.5 | PPR_2 | 335 | 384 | 5.00E-18 |
| PF13041.5 | PPR_2 | 405 | 453 | 4.60E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.160 |
| SRR2545915 | Juvenile tuber | 0.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.780 |
| SRR5643514 | five period of Gastrodia elata | 1.640 | |
| SRR5643515 | five period of Gastrodia elata | 1.460 | |
| SRR5643524 | five period of Gastrodia elata | 1.820 | |
| SRR5643525 | five period of Gastrodia elata | 1.160 | |
| SRR5643528 | five period of Gastrodia elata | 0.530 | |
| SRR5643658 | five period of Gastrodia elata | 0.760 | |
| SRR5643659 | five period of Gastrodia elata | 2.270 | |
| SRR5643660 | five period of Gastrodia elata | 3.170 | |
| SRR5643661 | five period of Gastrodia elata | 2.610 | |
| SRR5643662 | five period of Gastrodia elata | 2.980 | |
| SRR5643663 | five period of Gastrodia elata | 2.210 | |
| SRR5643664 | five period of Gastrodia elata | 2.510 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.790 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.020 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.20 |
| Juven | Juvenile tuber | 2.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.91 | |
| Mother_Juven | Mother tuber of Juvenile | 0.92 |