Detail information of GWHGAAEX012259/evm.TU.scaffold_42.56


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|76801281|ref|YP_326289.1|4.00E-16translation initiation factor IF-1A [Natronomonas pharaonis DSM 2160]
KOGKOG34034.00E-86Translation initiation factor 1A (eIF-1A)
nrgi|743771403|ref|XP_010915988.1|4.15E-95PREDICTED: eukaryotic translation initiation factor 1A-like [Elaeis guineensis]
Swissprottr|P56331|IF1A_ONOVI1.00E-90Eukaryotic translation initiation factor 1A
trEMBLtr|A5BQH0|A5BQH0_VITVI3.00E-95Putative uncharacterized protein {ECO:0000313|EMBL:CAN70425.1}
TAIRAT2G045204.00E-86Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005013315611331998+
Transcript Sequence

Network for GWHGAAEX012259

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01176.18eIF-1a32931.60E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03236EIF1A RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0006413Biological Processtranslational initiation
GO:0003743Molecular Functiontranslation initiation factor activity
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms54.240
SRR2545915Juvenile tuber41.040
SRP108465SRR5643513five period of Gastrodia elata141.670
SRR5643514five period of Gastrodia elata135.490
SRR5643515five period of Gastrodia elata131.130
SRR5643524five period of Gastrodia elata122.560
SRR5643525five period of Gastrodia elata481.470
SRR5643528five period of Gastrodia elata612.140
SRR5643658five period of Gastrodia elata544.270
SRR5643659five period of Gastrodia elata78.200
SRR5643660five period of Gastrodia elata95.680
SRR5643661five period of Gastrodia elata120.270
SRR5643662five period of Gastrodia elata124.030
SRR5643663five period of Gastrodia elata84.550
SRR5643664five period of Gastrodia elata221.110
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1114.360
SRR6049655Rhizomagastrodiae_C368-T10_good_185.440
SRR6049656Rhizomagastrodiae_C368-T07_good_1132.330
SRR6049657Rhizomagastrodiae_C368-T07_good_195.720
SRR6049658Rhizomagastrodiae_C368-T04_good_1158.020
SRR6049659Rhizomagastrodiae_C368-T04_good_1127.890
SRR6049660Rhizomagastrodiae_C368-T01_good_1123.660
SRR6049661Rhizomagastrodiae_C368-T04_good_1109.310
SRR6049662Rhizomagastrodiae_C368-T01_good_1166.290
SRR6049663Rhizomagastrodiae_C368-T01_good_1158.030
SRR6049664Rhizomagastrodiae_C368-T10_good_1237.130
SRR6049665Rhizomagastrodiae_C368-T10_good_1237.130
SRP279888GastroGastrodia elata tuber 93.90
JuvenJuvenile tuber72.53
Mother_GastroMother tuber of Gastrodia elata 317.41
Mother_JuvenMother tuber of Juvenile 106.78