Detail information of GWHGAAEX012260/evm.TU.scaffold_42.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2351 | 2.00E-12 | RNA polymerase II, fourth largest subunit |
| nr | gi|672166517|ref|XP_008803189.1| | 4.75E-56 | PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q6DBA5|NRPD4_ARATH | 3.00E-25 | DNA-directed RNA polymerases IV and V subunit 4 |
| trEMBL | tr|M0TT97|M0TT97_MUSAM | 3.00E-54 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P24440_001} |
| TAIR | AT5G09920 | 2.00E-12 | RNA polymerase II, Rpb4, core protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 1334299 | 1357940 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012260
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03874.15 | RNA_pol_Rpb4 | 160 | 229 | 1.50E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03012 | RPB4, POLR2D | RNA polymerase | map03020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006352 | Biological Process | DNA-templated transcription, initiation |
| GO:0044237 | Biological Process | cellular metabolic process |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0030880 | Cellular Component | RNA polymerase complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 70.080 |
| SRR2545915 | Juvenile tuber | 87.490 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 67.820 |
| SRR5643514 | five period of Gastrodia elata | 78.250 | |
| SRR5643515 | five period of Gastrodia elata | 66.170 | |
| SRR5643524 | five period of Gastrodia elata | 70.210 | |
| SRR5643525 | five period of Gastrodia elata | 31.950 | |
| SRR5643528 | five period of Gastrodia elata | 31.870 | |
| SRR5643658 | five period of Gastrodia elata | 30.420 | |
| SRR5643659 | five period of Gastrodia elata | 55.220 | |
| SRR5643660 | five period of Gastrodia elata | 55.360 | |
| SRR5643661 | five period of Gastrodia elata | 51.860 | |
| SRR5643662 | five period of Gastrodia elata | 40.220 | |
| SRR5643663 | five period of Gastrodia elata | 47.950 | |
| SRR5643664 | five period of Gastrodia elata | 46.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 54.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 73.300 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 54.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 48.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 36.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 38.490 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 41.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 39.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 71.690 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 71.690 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 63.22 |
| Juven | Juvenile tuber | 81.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.33 | |
| Mother_Juven | Mother tuber of Juvenile | 41.98 |