Detail information of GWHGAAEX012264/evm.TU.scaffold_42.63


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|390944042|ref|YP_006407803.1|7.00E-57pectin methylesterase [Belliella baltica DSM 15883]
nrgi|116519139|gb|ABJ99594.1|0pectinesterase inhibitor [Lycoris aurea]
Swissprottr|Q9FK05|PME61_ARATH0Pectinesterase 61
trEMBLtr|A0FHB9|A0FHB9_LYCAU0Pectinesterase {ECO:0000256|RuleBase:RU000589}
TAIRAT5G533700pectin methylesterase PCR fragment F

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005014358921438100-
Transcript Sequence

Network for GWHGAAEX012264

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04043.14PMEI581981.10E-26
PF01095.18Pectinesterase2505427.20E-142
Protein Sequence

Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0042545Biological Processcell wall modification
GO:0030599Molecular Functionpectinesterase activity
GO:0004857Molecular Functionenzyme inhibitor activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.340
SRR2545915Juvenile tuber3.250
SRP108465SRR5643513five period of Gastrodia elata48.280
SRR5643514five period of Gastrodia elata67.030
SRR5643515five period of Gastrodia elata51.040
SRR5643524five period of Gastrodia elata63.790
SRR5643525five period of Gastrodia elata184.410
SRR5643528five period of Gastrodia elata90.120
SRR5643658five period of Gastrodia elata222.030
SRR5643659five period of Gastrodia elata20.670
SRR5643660five period of Gastrodia elata21.780
SRR5643661five period of Gastrodia elata29.980
SRR5643662five period of Gastrodia elata53.510
SRR5643663five period of Gastrodia elata75.610
SRR5643664five period of Gastrodia elata48.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_132.900
SRR6049655Rhizomagastrodiae_C368-T10_good_134.110
SRR6049656Rhizomagastrodiae_C368-T07_good_140.460
SRR6049657Rhizomagastrodiae_C368-T07_good_129.100
SRR6049658Rhizomagastrodiae_C368-T04_good_116.850
SRR6049659Rhizomagastrodiae_C368-T04_good_115.860
SRR6049660Rhizomagastrodiae_C368-T01_good_136.190
SRR6049661Rhizomagastrodiae_C368-T04_good_124.930
SRR6049662Rhizomagastrodiae_C368-T01_good_198.070
SRR6049663Rhizomagastrodiae_C368-T01_good_192.850
SRR6049664Rhizomagastrodiae_C368-T10_good_168.930
SRR6049665Rhizomagastrodiae_C368-T10_good_168.930
SRP279888GastroGastrodia elata tuber 65.78
JuvenJuvenile tuber3.35
Mother_GastroMother tuber of Gastrodia elata 44.21
Mother_JuvenMother tuber of Juvenile 6.73