Detail information of GWHGAAEX012266/evm.TU.scaffold_42.65
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|407463104|ref|YP_006774421.1| | 4.00E-110 | tryptophanyl-tRNA synthetase [Candidatus Nitrosopumilus koreensis AR1] |
| KOG | KOG2145 | 0 | Cytoplasmic tryptophanyl-tRNA synthetase |
| nr | gi|695045879|ref|XP_009410743.1| | 0 | PREDICTED: tryptophan--tRNA ligase, cytoplasmic-like [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0TK67|M0TK67_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P23810_001} |
| TAIR | AT3G04600 | 0 | Nucleotidylyl transferase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 1478614 | 1506145 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012266
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00579.24 | tRNA-synt_1b | 94 | 378 | 5.90E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01867 | WARS, trpS | Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006418 | Biological Process | tRNA aminoacylation for protein translation |
| GO:0006436 | Biological Process | tryptophanyl-tRNA aminoacylation |
| GO:0004830 | Molecular Function | tryptophan-tRNA ligase activity |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 63.560 |
| SRR2545915 | Juvenile tuber | 39.040 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.780 |
| SRR5643514 | five period of Gastrodia elata | 33.950 | |
| SRR5643515 | five period of Gastrodia elata | 31.280 | |
| SRR5643524 | five period of Gastrodia elata | 30.860 | |
| SRR5643525 | five period of Gastrodia elata | 43.000 | |
| SRR5643528 | five period of Gastrodia elata | 38.060 | |
| SRR5643658 | five period of Gastrodia elata | 47.680 | |
| SRR5643659 | five period of Gastrodia elata | 34.660 | |
| SRR5643660 | five period of Gastrodia elata | 38.740 | |
| SRR5643661 | five period of Gastrodia elata | 34.240 | |
| SRR5643662 | five period of Gastrodia elata | 36.490 | |
| SRR5643663 | five period of Gastrodia elata | 37.880 | |
| SRR5643664 | five period of Gastrodia elata | 39.850 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 32.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 31.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 29.380 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.390 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 27.120 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 34.57 |
| Juven | Juvenile tuber | 45.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.90 | |
| Mother_Juven | Mother tuber of Juvenile | 35.45 |