Detail information of GWHGAAEX012267/evm.TU.scaffold_42.66
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530780331|ref|YP_008432137.1| | 3.00E-126 | Minichromosome maintenance protein MCM [Thermofilum sp. 1910b] |
| KOG | KOG0480 | 0 | DNA replication licensing factor, MCM6 component |
| nr | gi|743771274|ref|XP_010915924.1| | 0 | PREDICTED: DNA replication licensing factor MCM6 [Elaeis guineensis] |
| Swissprot | tr|Q6F353|MCM6_ORYSJ | 0 | DNA replication licensing factor MCM6 |
| trEMBL | tr|M0T6U4|M0T6U4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P13960_001} |
| TAIR | SPBC211.04C | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 1507818 | 1546065 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012267
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14551.5 | MCM_N | 59 | 145 | 4.50E-12 |
| PF17207.2 | MCM_OB | 152 | 279 | 4.80E-37 |
| PF00493.22 | MCM | 364 | 687 | 5.40E-133 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02542 | MCM6 | DNA replication | map03030 |
| Cell cycle | map04110 | ||
| Cell cycle - yeast | map04111 | ||
| Meiosis - yeast | map04113 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006260 | Biological Process | DNA replication |
| GO:0006270 | Biological Process | DNA replication initiation |
| GO:0003678 | Molecular Function | DNA helicase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0042555 | Cellular Component | MCM complex |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.560 |
| SRR2545915 | Juvenile tuber | 9.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.560 |
| SRR5643514 | five period of Gastrodia elata | 11.990 | |
| SRR5643515 | five period of Gastrodia elata | 9.050 | |
| SRR5643524 | five period of Gastrodia elata | 10.220 | |
| SRR5643525 | five period of Gastrodia elata | 3.990 | |
| SRR5643528 | five period of Gastrodia elata | 5.370 | |
| SRR5643658 | five period of Gastrodia elata | 4.840 | |
| SRR5643659 | five period of Gastrodia elata | 5.650 | |
| SRR5643660 | five period of Gastrodia elata | 4.680 | |
| SRR5643661 | five period of Gastrodia elata | 5.420 | |
| SRR5643662 | five period of Gastrodia elata | 4.170 | |
| SRR5643663 | five period of Gastrodia elata | 4.410 | |
| SRR5643664 | five period of Gastrodia elata | 2.850 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.220 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.170 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.170 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.22 |
| Juven | Juvenile tuber | 27.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.62 | |
| Mother_Juven | Mother tuber of Juvenile | 6.77 |