Gene detail

Detail information of GWHGAAEX012272/evm.TU.scaffold_42.70

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|408402717\|ref\|YP_006860700.1\|	2.00E-13	archaeal thermosome [Candidatus Nitrososphaera gargensis Ga9.2]
KOG	KOG0230	0	Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins
nr	gi\|672108083\|ref\|XP_008783268.1\|	0	PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like [Phoenix dactylifera]
Swissprot	tr\|Q9LUM0\|FAB1B_ARATH	0	1-phosphatidylinositol-3-phosphate 5-kinase FAB1B
trEMBL	tr\|M5WQM8\|M5WQM8_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ16097.1}
TAIR	AT3G14270	0	phosphatidylinositol-4-phosphate 5-kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	1625468	1663685	-

Transcript Sequence
>GWHTAAEX012272 AACACTAGAAAATAAAATCTGAGTAGTCTGCCTCTTCTTCTGCTTAGGTTTAGGGTTATTTATTGCTTCGTGAACGTTGCGCGCTTCTCTCTCCGGTCACGTTGCTCTCTCCTCTCTCTGTAGACGTTGCAATATCTTCTCCCCTGGCTAAATCCCGCGGGTAATTTGTTAAATCCAGGCTAATCCTGCGGGTAAACTGTGAAATCCAGGGGAGGGTGGATTTATTCAATCCGAGATTCAGCCGGATTGACTTGATTTTGAGATTTTGAAGGCGGTGGCTTAAATCCTATTTGTCTCGACTCAAGGATTTAGATGTTTAATCCTGCCAAAATTTGTTACCTCCGTGTTTTTTCAGATTGGGGATTTACGATGATTTATCGAATTGGATATTTACGGCAATGTTGGGGGAAAATGGGATTTCGCTTGACCTCAAAAAACCGTTTGGAAATATTCTAACCAAATGCTGGTTAAATTCGGCAATTTTTTTATCAACCAGCTTTTTATCGGGACATCAGCATTGCAATTCATGTAATAAAGCCATTAAGCTTGTCCATGGGTTGCTGATTTCAAAATGTAATCCGTGGGTTTATACAATGCAGCTTGTCTGGGATTGTGTTTTATTGATCTTAATTTTGTTGAAAAAGGTTTTGAAGATGGAGTTAAGTTTTCGTAATCTTCAGCGTCTGTATATGACTTCATTAGAATGACAAGTTCAGGGGGATTAACAGTTCATGGAAAACCGAGATAACATGCTCTCTGAATTGTTAGAGTTAGTGAAGTCCTGGTTTCCTGGACAGTCTGAGCCTGCATACGTGTCGAGGGACTTCTGGATGCCCGATAATAGTTGCAGAGTCTGCTATGACTGTGATGTGCAATTCACCTTGTTTGTTCGCAAGCACCATTGCCGGTTGTGCGGTCGAGTTTTTTGTGGGAAATGCACTGCTAATTCTATTCCTGTACCTTCTGTTGATCCAAAGAATAAACAGTCAGAGAGGGATAGGGTTCGAGTATGCAATTTCTGCTTCCAGCAATGGCAGCTGGAAGTAACTTCTGCAGCTGATGCAATAATAATCTCGAATGCTGGTATGGATGAATCCTTTTTGACTGAAAGTATTATTAGCACTAGATCTAGTTGCACATTTAAGAGTAGCACCATGACTGCTTGTTCCATGGCTTATTCAAACGAGCCTTACTCACGAGTTCCTTATGGGTCTGCTTCACTTGGGATCTTTGAGTCTAGGACTAATAAGCAGGGCATTTTAATGCTGGAAAGGAATGCGGATTCTGTTGCTTATGTAGGCGATACTTGTTCTAACAACTTTAATTACTGTACGAGCAGAAGCGATGATGACGATGATGTATATGGTGCATGCCATTCCGAATCAGTATCAGTTCAATTCCAGAATTCTGATGATTACTATGGCCGTGAATTTGATGAAACTGATCAAGACTATGACACAAATAAAGCGAACCTTGCTGAAAAAAATGTAACTTCTGAAGTTGAGTGCTCTCCAATTGTTGATTGTGCTAAGTCACAGGATTCAAATTGCTCTGATAAAATGGCAGAAAGAGGGCCTGAGCATTGTGATGAATACGGTGTTTCTTCATCCATATATGCAATGGAAGGAGCAAATGAACTTGCAGATTTTGAGAACAATGAACTACTTTGGCTTCCTACTGAGCCTGAGGATCAAGAAGATGAGTGTGAGCCAGTATGTAATGGTGAAGAGTATGATCCCGCCGGAGAATGGGGATATCTTCGTCCTTCAAAGAGCTTTGGTAGTGGATCAAGTGATGAGCACAAAAGAGCAGTGAAAAATGTTGTTGGTGGGCACTTTAGAGCATTAATTGCCCAACTTCTAGAGATTGAAAACCTTCCAATTGGCGAAGAGGGTGACAAGGAAAGCTGGTTGGAAATTATTACATCATTGTCATGGGAAGCAGCAACACTTCTCAAACCAGACACTAGCAAAGGGGGAGGAATGGATCCTTGTGGGTATGCTAAAGTCAAGTGCCTTGCTTGTGGACATCGTAGTCAAAGTGTTGTGGTAAGAGGAGTTGTTTGCAAGAAGAATGTTGCACATCGCCGTATGATGTCAAATACTGAAAAACCAAATATTCTAATTCTTGGAGGAGCGCTTGAATACCAGCGAGTAATGAATTCATTATCAAGTTTTGACACTTTGCTGCAACAGGAAATGGACCACTTGAAGATGGCAGTCGCAAGAATTGGATCTAACTATCCAAATGTTCTTTTAGTGGAGAAGTCTGTGTCACGCTTTGCTCAAGATTATCTTCTTGCAAAAAATATTTCACTAGTTTTAAATATCAAAAGACCACTTCTTGAGCGTATATCTCGTTGCACCGGTGCTCAAATAGTCCCTTCTATCGACCATTTGTCATCACCAAGGCTTGGACGTTGTGATCTATTTCATGTGGAGAAGTTTTTGGAGGAACATGGCACTGCTGGTCAGGGAGGGAAGAAGCAAGTGAAGACTTTGATGTTCTTTGAAGAATGCCCAAGACCACTTGGTTGTACTATTCTTCTCATGGGTGCAAGTGGAGATGATTTGAAGAGGGTGAAACATGTGGTTCAGTATGGTATTTTTGCTGCCTACCACCTTGCTTTGGAAACTTCTTTCCTTGCAGATGAGGGGGCCTCTCTCCCTGAATTTCCTTTGCAGTCACCAATAACTGTAGCATTGCCAGATAAACCTTCTGTGATCAACAGATCCATATCCACTATACCTGGTTTTGCAGGTAGTACTTCTGATGATAACAATGACATAAATGCTAATTTTGCTCATTTTGTCTCATCCAAAATTAATATGCCTGAGCAAGGGGAATTGCACACATCTGCACTTCAATGCACTAGTCCTCAGATGGAGCAGGCTGCTACTACGGTTATTTCTACTCAGCCTGGTGATCATCTGCTGAATTTCAGCGTTGTCATGGATGCTGTGGATACACAAAGTAGAGAACCTTTTATGGTGAAAAGTTGCTTGAGTACAGGACAGTTTTTAAGGGAAAAGGATCAAACATGTTTTGTGGGATATCCGAATGCTAAGATCTCAAATGATATTTGTGAGCATGGCATCGTTAAATCTGTTGCTCTGGAAGATGATTTGAAGAATGAGAATCTAGTTGGCTCATCTGATGCAGTGAATTTGTATAATGATAGTAGCCAACTACAGGATAATACACAACCAGCGGAGGATTTTTCACCATCTCCTTCAGATCATCAAAGCATCATCGTTTCTTTATCAAGCCGTTGTGTGTGGAAAGGCACTGTATGTGAGCGTTCTCATCTTTTTCGCATAAAATACTATGGTAGTTTTGATAAACCTCTGGGAAGGTTTTTGAGGGACCATTTATTCGACCAGGGTTATCGCTGCTCTTCTTGTGACATGCCTTCTGAAGCTCACATTTATTGCTATACGCATCAACAAGGTAGTCTGACAATATCAGTTCGAAAACTAGAGTTTCATTTGCGCGGAGAACGGGATGGAAAGATATGGATGTGGCACAGGTGTTTGCATTGTCCTCGGGTTAATGGTTTCCCACCAGCAACCAGAAGAATTGTGATGTCAGATGCTGCTTGGGGTTTATCTTTTGGTAAATTCTTGGAGCTTAGTTTTTCAAATCATGCTGCTGCTAGCAGGGTTGCTAGCTGTGGACATTCTCTTCATAGAGATTGCCTTCGGTTTTATGGGTTTGGAAAAATGGTTGCCTGCTTTCGATATGCATCTATTAATGTTCACTCCGTTTGTCTGCCACCTCATAAACTTGATTTTAACTACAGATGGCAGGATTGGATACAAAGAGAAGCAAATGAGGTTGTTGAAAGGAAAGAGTTGTTGTTCGCTGATGTATTAAAGTCACTTGGACAGATTGCAGTTAAAAAACCGGGCAGTGAGGTTAATACAAAAAAATCGGAGTTCCATCATTTTATTCACAAACTTGAAGAAATGCAGCTTAAAGAGAAGGAAGAATTTGAGGAATTTTTAAATAAAGTGCTTAAAAAGGAGGTGAAAACGAGAGAACCTGTCATTGATATTTTGGAGATAAATAAGTTAAAGAGACAGTTGATCTTTCAGTCATACCTTTGGGACCAACGCTTAATATATGCCACGGGATTAGAATATCGTCCTCATGAGTTACTTGGTTTCTTTATTAGTGATGGTGAAAAATTATCAACTGAGAAACTAGAAGATTCAACTGCAGTTTGTAAAGTAAAAACCAGCTTTGTGTGCACCAACACTGCTGATTCAGATTTTAGAATTGTTGAAACTATCAAGGATGATAATCTTGCAGTTAGTCGTATAGAAGAACAATCTGACCAGTCAAACAATAGAAATTTGTATCAGCAAAATTTATATACTGAAGCTGACACTGTTGATGAAAAGCAAATTATGACTAGTTTTTCTACTTGTGCTGGTGAGGGTACTCAATCATATCATTTGGCATCTAGTATCATTGGGCCTAAGCCCCCATCTGAAGGGAAGTTTCCAATATTGGAAAATATTTCTGATACATTTGATGCAAAGTGGGCAGGCGAAAATGAACCTGGATTTGCAGATGTAAGCACACATGACTCATCTGTTTTAGCTTCTGATGACACAGAAGAGAAAATTGTAGCTGATGTTACAGAGTCTTTGGTCTCTGCATTACCTGACAGGTTGGGGGAAAGGGCGGAAGAGTTCTCTAGTTGGATTAAGTTGCCTTTTTTATATCTTTATCAGTCTTTCAACAAGAGCTTAGAAAGCACTTCAAGGTTTGAGATCCTCAATCAGTACAATCCTATCTACATTCCGCTGTTCCGGGAGTTAGAGCATCAGGACAGCGGAAGGTTGCTTCTTCCAATTGGAGAAAATGATACTGTGGTCCCAGTTTATGATGATGAGCCCACAAGTATTATTTGTTATGCTCTTGCTTCAGCTGACTATTATTTTCAGATGTCAGATGATCGTGAAAGGATTAAAGATTTTGGTGATTCTTCCCTTCATTCAACCTTAAGTGGCTTGGTCAACCTTCAGTATTCTCATTCAATTGATGAGGTCTCGTCTGAATCCTTTAAAAGCTTTGGTTCAACTGAAGAGGGCATATTGTCAATGCCTGGAAGCAGAAGTTCTTTGGATCCAATTTTGTATACAAAAGCAATGCATGCTAGAATTTCTTTTGAAGATGATTGCTCACTTGGGAAAGTCAAATATACAGTGATTTGCTATTATGCTAAGTGCTTTGATGCTTTGAGGAGAACATGTTGTCCATCTGAACTTGATTTTATAAGATCTCTCAGTCGTTGCAAAAAATGGGGGGCTCAGGGAGGCAAGAGTAATGTATTCTTTGCAAAATCATTAGATGACCGGTTTATCATTAAACAGGTCACAAAAACAGAAATTGAATCATTTATCAAATTTGCTCCAGAGTACTTTAAGTATCTCTCAGAATCTATTGCGACTGGAAGTCCTTCTTGCCTTGCAAAGATACTCGGCATCTATCAGGTGGCAACTAAGCACTTTAAGGGTGGAAAAGAGACAAAAAAGGATGTACTTGTTATGGAAAATCTTTTATTTGGAAGAACTGTAACAAAGTTATATGACCTCAAGGGATCTTCAAGATCAAGATACAATCCGGATGCAAATGGTCATAACAAAGTACTTCTTGATCAAAATTTAATTGAAGCAATGCCAACATCTCCAATATTTGTTGGAAACAAAGCAAAGCGGTTACTGGAGAGAGCTGTTTGGAACGATACATCTTTCCTAGCGTCAATAGATGTGATGGACTATTCTTTACTAGTTGGTGTGGATGAAACGAAGCATGAGTTAGTTCTAGGAATTATAGATTTTATGAGGCAATATACGTGGGATAAGCATCTTGAGACCTGGGTCAAAGCCTCGGGTATTTTGGGTGGCCCAAAGAACGTATCTCCTACAGTGATTTCACCTAAGCAATACAAGAAGCGATTCAGGAAAGCAATGTCTGCATATTTTCTTGTCGTCCCCGATCAGTGGTCGCCCCTCTCTGTTGCACCTCCCAAGCTGCAGCCCGATATTGAAGAGAACTGCAAACAGAGCTCCTGAAATCATGAGGTTGATGGCGCCGTGCCTTCTCGCTCGCTGGTGGGCTGCCGCCACTCATGGCAAGCACATATCTCTTTCGCATTAAAGCTTCAAAAATATGCCAATTGAAAACTCAAAAAGGATGCCCCTTTTGGAGGATATAAGGTAATAAAAACTCCCAATGGTCGGGACAGGACTCCATTTTCTTCTTACAGTCCTCTCCTTAATGCGGCTTCAAGTTCCGATATACTTTCCAGAAACTCTGCCAAATCCTTTGGTTATTACTCTTTCCTTCTGCCAACACAAAAGCTTTCCTCTTCTTTGTTTGATATCTTTGATGGCTTATTACCAAATTGAGCAATTGTGCATAATCTCTCCTATTTTGCATATACATGCATATATATAATATATATGGTATTTTTAATTTCATTTTCACGTCTGTGGATTCCTGGAGGTCTGTCAGAGAGGCTCAGCAGATGAAAGCAAACCTCTTCTGATGGTATTTATTTGTTGATTCTTTTATATTCTGCAAATTTGCAGTGCGATCACTGTAATGAACAAAAGTTGAGTTAGAAATCGTTATAATGTAGTTTTTATTTTATTCTTTTTGTTCCTTTTCCTAAAATTATAATCAATCAGTTTATTTTTTTCTTGAAAGAAGTGTGGGCAGTTCATCTCGT

Network for GWHGAAEX012272

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01363.20	FYVE	33	101	7.60E-18
PF00118.23	Cpn60_TCP1	391	635	2.40E-28
PF01504.17	PIP5K	1531	1697	6.90E-33
PF01504.17	PIP5K	1698	1753	7.60E-07

Protein Sequence

>GWHPAAEX012272
MENRDNMLSELLELVKSWFPGQSEPAYVSRDFWMPDNSCRVCYDCDVQFTLFVRKHHCRLCGRVFCGKCTANSIPVPSVDPKNKQSERDRVRVCNFCFQQWQLEVTSAADAIIISNAGMDESFLTESIISTRSSCTFKSSTMTACSMAYSNEPYSRVPYGSASLGIFESRTNKQGILMLERNADSVAYVGDTCSNNFNYCTSRSDDDDDVYGACHSESVSVQFQNSDDYYGREFDETDQDYDTNKANLAEKNVTSEVECSPIVDCAKSQDSNCSDKMAERGPEHCDEYGVSSSIYAMEGANELADFENNELLWLPTEPEDQEDECEPVCNGEEYDPAGEWGYLRPSKSFGSGSSDEHKRAVKNVVGGHFRALIAQLLEIENLPIGEEGDKESWLEIITSLSWEAATLLKPDTSKGGGMDPCGYAKVKCLACGHRSQSVVVRGVVCKKNVAHRRMMSNTEKPNILILGGALEYQRVMNSLSSFDTLLQQEMDHLKMAVARIGSNYPNVLLVEKSVSRFAQDYLLAKNISLVLNIKRPLLERISRCTGAQIVPSIDHLSSPRLGRCDLFHVEKFLEEHGTAGQGGKKQVKTLMFFEECPRPLGCTILLMGASGDDLKRVKHVVQYGIFAAYHLALETSFLADEGASLPEFPLQSPITVALPDKPSVINRSISTIPGFAGSTSDDNNDINANFAHFVSSKINMPEQGELHTSALQCTSPQMEQAATTVISTQPGDHLLNFSVVMDAVDTQSREPFMVKSCLSTGQFLREKDQTCFVGYPNAKISNDICEHGIVKSVALEDDLKNENLVGSSDAVNLYNDSSQLQDNTQPAEDFSPSPSDHQSIIVSLSSRCVWKGTVCERSHLFRIKYYGSFDKPLGRFLRDHLFDQGYRCSSCDMPSEAHIYCYTHQQGSLTISVRKLEFHLRGERDGKIWMWHRCLHCPRVNGFPPATRRIVMSDAAWGLSFGKFLELSFSNHAAASRVASCGHSLHRDCLRFYGFGKMVACFRYASINVHSVCLPPHKLDFNYRWQDWIQREANEVVERKELLFADVLKSLGQIAVKKPGSEVNTKKSEFHHFIHKLEEMQLKEKEEFEEFLNKVLKKEVKTREPVIDILEINKLKRQLIFQSYLWDQRLIYATGLEYRPHELLGFFISDGEKLSTEKLEDSTAVCKVKTSFVCTNTADSDFRIVETIKDDNLAVSRIEEQSDQSNNRNLYQQNLYTEADTVDEKQIMTSFSTCAGEGTQSYHLASSIIGPKPPSEGKFPILENISDTFDAKWAGENEPGFADVSTHDSSVLASDDTEEKIVADVTESLVSALPDRLGERAEEFSSWIKLPFLYLYQSFNKSLESTSRFEILNQYNPIYIPLFRELEHQDSGRLLLPIGENDTVVPVYDDEPTSIICYALASADYYFQMSDDRERIKDFGDSSLHSTLSGLVNLQYSHSIDEVSSESFKSFGSTEEGILSMPGSRSSLDPILYTKAMHARISFEDDCSLGKVKYTVICYYAKCFDALRRTCCPSELDFIRSLSRCKKWGAQGGKSNVFFAKSLDDRFIIKQVTKTEIESFIKFAPEYFKYLSESIATGSPSCLAKILGIYQVATKHFKGGKETKKDVLVMENLLFGRTVTKLYDLKGSSRSRYNPDANGHNKVLLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDTSFLASIDVMDYSLLVGVDETKHELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNVSPTVISPKQYKKRFRKAMSAYFLVVPDQWSPLSVAPPKLQPDIEENCKQSS

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
K00921	PIKFYVE, FAB1	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Phosphatidylinositol signaling system	map04070
		Phagosome	map04145
		Regulation of actin cytoskeleton	map04810

Gene Ontology

GO term	Ontology	Name
GO:0046488	Biological Process	phosphatidylinositol metabolic process
GO:0046872	Molecular Function	metal ion binding
GO:0005524	Molecular Function	ATP binding
GO:0016307	Molecular Function	phosphatidylinositol phosphate kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.050
SRP064423	SRR2545915	Juvenile tuber	5.980
SRP108465	SRR5643513	five period of Gastrodia elata	4.260
	SRR5643514	five period of Gastrodia elata	4.430
	SRR5643515	five period of Gastrodia elata	3.870
	SRR5643524	five period of Gastrodia elata	3.250
	SRR5643525	five period of Gastrodia elata	3.280
	SRR5643528	five period of Gastrodia elata	2.540
	SRR5643658	five period of Gastrodia elata	4.310
	SRR5643659	five period of Gastrodia elata	5.800
	SRR5643660	five period of Gastrodia elata	6.540
	SRR5643661	five period of Gastrodia elata	5.590
	SRR5643662	five period of Gastrodia elata	5.400
	SRR5643663	five period of Gastrodia elata	5.460
	SRR5643664	five period of Gastrodia elata	5.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.020
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.290
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.880
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.390
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.850
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.950
SRP279888	Gastro	Gastrodia elata tuber	4.74
	Juven	Juvenile tuber	4.31
	Mother_Gastro	Mother tuber of Gastrodia elata	1.61
	Mother_Juven	Mother tuber of Juvenile	2.34